Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00052 ATGGACCCTTCTATTGTGAAGCTTCTTGAAGATGATGAGGATTGGCAAGATGAAACCGAAGGTTCAAGACGAGAAGTGGAAGCTTTCCAGGCTGCCTTGACTAGAGACATAGGAGGTGATGCGGCTGCTACATTCCAGACATCTGGATCAAATCCAGGATCACAAATGGAAGCTGCTAGCCAGAGTGGAAATATTGACAGTCAAGTACAGCCATCTCAGCAGGAACAGAATTCATCTGAAATACAGGAAAAGCAAGAGCCATTGAATATTGAGAAGCAGATATATAATAAAGTTCTCATAGCCTCACAGATGAAGCCCCAGGAAAATCACAAATATGAGGCAGCAGCAGATAAGGATCCCAATCAGATTTCTCAAGTGACTGGGGTTCCAGTGTCTGAAAGTAATCCAACACTTAACAATGAACCAGACAGAATGTTCAATCGAGATAGTGAATCTCAATTCTTAAAACTTCAAAAGATGAGTAATCAACAAGCAACTATCTTAGATAGGACAAGCAACCAAAACAATCGTGGTGGTGGTAAGCAGGTTCCATTTGCTGTACTATTGCCTGTATTGTTGCCTCAGCTTGATAAAGACAGAGCAATGCAACTTCAAACTCTATTTAACAGGCTGAAGAAAAATGAAATTATAAAAGATGATTTTGTGCGGCTCATGAGAAGTGTTGTGGGAGATCAAATGCTCAGATTAGCTGTTTCTAAAGTTCATTTCCAGTCTGCTACAAACCAGTTTCAGTTACAGACTCCACCTGCAGCACAGCAGCTCCCTCCAAGGACAGCCCCAATAAGTGCTGGTGCCACAAACTTGACTGATCGTCAATCATTTGCCCAACTTCATCAGAAAAGCTCCAACTCTTCTGCAATCTCAAATCTTCATTTATCAGCAGCCCAGGGACAACCTAATACTGGCTATGTTAAAACAGAAAACAGTGAAGAATCATCTCAAGAAGGAGGACGACAAAGTACTGGAAATCCTTTATCTTCTTCCATTTCAGGTGCTAATCAAGGTACTAGAAGAGAGCAATCATCAGCTATCATACAAGGATTAGAAAAGCCTCCGCAACAGCAGATCCCATTTCAACAAAAAGCCTTTTCTATGTATGGAACAGGAAGCAATGCTAGCAATTATCATCCATCTTCAGGGTCAGGCATCACTACTTCCACATCATCTTTTAAATCACCGTCCCAAGAGTTACAAATGAGGCAAGTTCCTCCACATCGGAGCATTTCAGCTCAGTTAGGGGGGAGCCTGTCAGTCATGAACATGGGTGACCAAGGAAGCGGAAAAACTGGTCCAATAAAGGATGAGTCTTCGGAAAAGCAGTCTTCTAAAATAGGTTTTACAACAGCTATTGGTGGTCCTTCAACATCTGGAAATGTTTTTCCCTCAAGTACAGTTTCCCCAAATATAACCACGCAAGTGGACTCCAATGCCATGCTAGAATCTCGCAACCCTTCTATCACTGTAGCTTCTGGGGTTAATAGGACACCTCCAAAGAAACCTTCAGTGGGCCAAAAGAAACCACTTGAAACAGTTGGTGCTTCACCACCTCCATCAAGCAAGAAGCAAAAACTGGCGGGTGCCTTTTCGGATCAAAGCATCGAACATCTCAATGATGTTACTGCTGTCAGTGGAGTTAACATTAGGGAAGAAGAAGAACAATTGTTTTCTGGTGTAAAGGATGACCTTCGGGTATCAGAAGCATCACGTAGAGTTGTGCAAGAAGAAGAAGAAAGACTTATCTTGCAGAAGATTCCGTTGCAGAAAAAATTGTCTGAAATTATGGTGAAATGTGGTTTAAAAGGTATAAACAAAGATGTTGAAAGATGTCTCTCGCTGTGTGTGGAAGAGCGAATGCGTGGTCTGATAACTAATTTAATCAGATTGTCAAAGCAGAGGGTTGATGTTGAATTGCCAAGACACAAAACTGTCATCACCTCTGATGTACGGCATGGAATTATGATGATGAATTGGAAAGCAAAGGAAGAATGGGAGAAGAAACAGGCGGAAGTAGAAAAACTCAGGAAGCTTAACGACCCTGAGGACGGTAATGGAAGTGCAGCTGATAAGGAGAAAGATGATGGTCGTACCAAGTCGGTTAAGGTAAACCGGGATCAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCACGAGCCGCTGTTGGAGGAGACGACATGCTTTCAAAATGGCAGCTTATGGCTGAGCAAGCTCGACAGAAACGCGAAGGAAGCACAGATGGACATGGAGCATCGTCCTCCTCTCAGCCTGTTAAAGATGTTGCTCGCAAGCCTACATCGAATTTGGGTAGAAATGCAAATGACAGTCAAGAAGTAGAGAAAAAGGGGCCTACTAGAAAAATTGGTAGGAACCAAGTGATGGCGCCTCAGCCTGGAGTGGCAAGAAGTATCTGTGTTAAAGATGTGATTGCTGTTCTGGAAAGAGAACCCCAAATGTCTAAATCCACCACGCTGTATCGGTTGTATGAGAAGATTCGTTCTGAGGGTAATGCTGATTAA 2541 42.82 MDPSIVKLLEDDEDWQDETEGSRREVEAFQAALTRDIGGDAAATFQTSGSNPGSQMEAASQSGNIDSQVQPSQQEQNSSEIQEKQEPLNIEKQIYNKVLIASQMKPQENHKYEAAADKDPNQISQVTGVPVSESNPTLNNEPDRMFNRDSESQFLKLQKMSNQQATILDRTSNQNNRGGGKQVPFAVLLPVLLPQLDKDRAMQLQTLFNRLKKNEIIKDDFVRLMRSVVGDQMLRLAVSKVHFQSATNQFQLQTPPAAQQLPPRTAPISAGATNLTDRQSFAQLHQKSSNSSAISNLHLSAAQGQPNTGYVKTENSEESSQEGGRQSTGNPLSSSISGANQGTRREQSSAIIQGLEKPPQQQIPFQQKAFSMYGTGSNASNYHPSSGSGITTSTSSFKSPSQELQMRQVPPHRSISAQLGGSLSVMNMGDQGSGKTGPIKDESSEKQSSKIGFTTAIGGPSTSGNVFPSSTVSPNITTQVDSNAMLESRNPSITVASGVNRTPPKKPSVGQKKPLETVGASPPPSSKKQKLAGAFSDQSIEHLNDVTAVSGVNIREEEEQLFSGVKDDLRVSEASRRVVQEEEERLILQKIPLQKKLSEIMVKCGLKGINKDVERCLSLCVEERMRGLITNLIRLSKQRVDVELPRHKTVITSDVRHGIMMMNWKAKEEWEKKQAEVEKLRKLNDPEDGNGSAADKEKDDGRTKSVKVNRDQDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGSTDGHGASSSSQPVKDVARKPTSNLGRNANDSQEVEKKGPTRKIGRNQVMAPQPGVARSICVKDVIAVLEREPQMSKSTTLYRLYEKIRSEGNAD 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2351764 2358480 - Bma020741.1 Bma05g00052 82136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00052 846 Pfam RCD1-SRO-TAF4 (RST) plant domain 181 241 IPR022003 -
Bma05g00052 846 MobiDBLite consensus disorder prediction 40 88 - -
Bma05g00052 846 PANTHER IP01149P-RELATED 46 840 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 754 781 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 680 719 - -
Bma05g00052 846 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 46 840 IPR045144 GO:0005669|GO:0006352
Bma05g00052 846 MobiDBLite consensus disorder prediction 304 348 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 427 533 - -
Bma05g00052 846 Gene3D Histone, subunit A 588 633 IPR009072 GO:0046982
Bma05g00052 846 ProSiteProfiles RST domain profile. 176 247 IPR022003 -
Bma05g00052 846 MobiDBLite consensus disorder prediction 1 24 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 448 501 - -
Bma05g00052 846 CDD TAF4 538 834 IPR007900 GO:0005669|GO:0006352
Bma05g00052 846 MobiDBLite consensus disorder prediction 742 807 - -
Bma05g00052 846 Pfam Transcription initiation factor TFIID component TAF4 family 543 835 IPR007900 GO:0005669|GO:0006352
Bma05g00052 846 MobiDBLite consensus disorder prediction 41 84 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 680 717 - -
Bma05g00052 846 MobiDBLite consensus disorder prediction 376 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00052 K03129 TAF4; transcription initiation factor TFIID subunit 4 - csv:101206316 739.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00675 Bma05g00052 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00675 Bma-Chr1:6159690 Bma05g00052 Bma-Chr5:2351764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43