Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00055 ATGGCCCTCCAAGCTATGACCTCTCCGGTGGCCCCGTCGTCTGTGTTTCAGTGCGACGATTCAAGCCTTGATTACTTGGAGTCGTGGACGAAGGGGAAGAGGTCCAAACGACCGCGTTTGGACGGTGCGACGACGGAAGATGAATATCTTGCTCTCTGCCTCGTCATGCTCGCACGCGGTGGCCGGCCGGTTTCGTCTTTACCGGAGATTGAAGATCCGTCGGCGGCGAAGCACATCTACAAGTGTTCTGTTTGTGACAAGGCGTTTTCTTCGTACCAGGCTTTGGGTGGACACAAGGCGAGTCACCGGAAACACGTCGGCGGAGAAGATCTTTCGACGTCGTCTACGGCCACGACGATCTCTGCTCTAACAGCAACCACCTCAGGCTCAGCTTCTATCGCCGGAGTAAGAACCCACGAGTGCTCTATTTGCCACAAGTCGTTCCCGACCGGCCAGGCTTTGGGCGGACACAAGCGCTGCCACTACGAAGGCGGCAATAAATCCAACAGCGCCACCTTGACCTCGTCGGAAGGAGCCGGCAGCTCCAGCCATATCCGCGGCTTCGATCTCAACCTCCCAGCTTTACCAGAATTCTCAGCGAAGTTCTTCAAATCCGGCGACGACGAGGTAGAGAGCCCTCTTCCTACAAAGAAGCCTCGTCTTCTGATACCGCCAAAAATGGAAGTCTCTCAAGATCACTGA 702 55.84 MALQAMTSPVAPSSVFQCDDSSLDYLESWTKGKRSKRPRLDGATTEDEYLALCLVMLARGGRPVSSLPEIEDPSAAKHIYKCSVCDKAFSSYQALGGHKASHRKHVGGEDLSTSSTATTISALTATTSGSASIAGVRTHECSICHKSFPTGQALGGHKRCHYEGGNKSNSATLTSSEGAGSSSHIRGFDLNLPALPEFSAKFFKSGDDEVESPLPTKKPRLLIPPKMEVSQDH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2378669 2379370 - Bma020744.1 Bma05g00055 82139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00055 233 Pfam C2H2-type zinc finger 139 162 - -
Bma05g00055 233 Pfam C2H2-type zinc finger 80 104 - -
Bma05g00055 233 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Bma05g00055 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 110 IPR013087 -
Bma05g00055 233 SUPERFAMILY beta-beta-alpha zinc fingers 79 161 IPR036236 -
Bma05g00055 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Bma05g00055 233 MobiDBLite consensus disorder prediction 205 233 - -
Bma05g00055 233 Gene3D Classic Zinc Finger 78 161 - -
Bma05g00055 233 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Bma05g00055 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Bma05g00055 233 SMART c2h2final6 80 102 IPR013087 -
Bma05g00055 233 SMART c2h2final6 139 161 IPR013087 -
Bma05g00055 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00055 Bma-Chr5:2378669 Bma05g00067 Bma-Chr5:2528079 4.31E-171 dispersed
Bma12g00878 Bma-Chr12:39990988 Bma05g00055 Bma-Chr5:2378669 7.76E-19 dispersed
Bma01g00678 Bma-Chr1:6175995 Bma05g00055 Bma-Chr5:2378669 1.38E-126 wgd
Bma01g02250 Bma-Chr1:79678041 Bma05g00055 Bma-Chr5:2378669 2.72E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57284 PF13912 zf-C2H2_6 1.60E-12 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00055 - - tcc:18591995 266.929