Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00060 ATGTACGCGGTGGAGAGGTTAGGTAGCTACATTACGCGAGGCGTTTATACAGTTTCCGGGCCGTTTCATCCTTTCGGCGGCGCGGTAGACATTATCGTTGTTGAACAGCCAGATGGGAGCTTCAAATCCTCACCTTGGTATGTTCGTTTTGGAAAATTTCAAGGGGTTTTGAAGACGAGAGAGAAGGTTGTTAATGTGAGCGTCAATGGCGTAGAAGCTAAATTCCCCATGTATTTGAATCATAAAGGGGAAGCTTACTTTTTGAGAGAGGTAGATGATAAAGAAGAAGATTCTATGAGAGGTGATTATGATTCTAAGAATTTTGCTGCATTTGATGGGATTGAGAAGAGCAATAGTAGGGTAGTGGGTAGAACCGGTTCTCGTAGATCAAGATTGCTTCAGCTCGTATTTGGCCGAAATTCGATCAACGAAGATGGCGTGGCGAGAGCTGATTCGTTAGAGCGAGCCGAATTCGCTGCAAATCTCTTGGAGGTGAAGTGGTCAACTAATCTCTCCTCTGATCCTAAGATTTTGAAAGATAATGGAGTGAGTTCTTCTGCTTTGAGTAAATTAGATGGCAACGATGCTAGAAACGTAAATATTAGCGATGGGGAAATCAATGAGAGTTCATTGTCACGAGATAACACAAATACTGGTCGAGAAAGTGATTATCCTGATCAGAAGCCGTGTAGTGGGGTGGATTCGATTGTTGAAAATGGAGCTGTTGAAGCTTCCATGATTGGCAAGGAAGGATCGGAAGGGACTCGTGAAATTGTATATGAAACTGCAGGACAGATTGATGAGGTGATCGTTGAAACAACTGAGCAGATTGCGAATAATTCTTCCAAATCGTATGGTTCTCGAAGTTTGGTCAAATCAGATGGAGTAGATTCGTTCGATTATCTTGAAATTTCAGAGAGCTCCGCATTGAAAGGCGACGATTCCACGAATACAGAGCTGTCAATTAAGGAAACTATTATTGAATATGGGAAGGACTTGAATTCTTCTATACGATCAGACTCATGTGTGCAACAAATAAACATTGTGGAGCAAATATCTGATTCGATCGAAGGAGTTTCGAAAACTATGGAGGAAGAAGATAGCATTTTCACTTCTGGATCGAGAGAATCTTTTGGTGATAGAATGTTGGAAGAAACAGCGAATTCGTTTGAAGAGCAATTTCTTTTCAGTGATCTCGATGTGTTGGAAAACACCAAGGTTCATCCTTTGGACTCGAGTTTCCTGGATTGCCTGAAAGAAGAAAACGATAAATCTATCATCGAAAATTATAATTTGTCAATTGAAGAACCTGAAAGCTTGATCAAAACAACTTCATTTCCCATTACGATTCCGAAAACTAATCAGGTTGATGTTGATCGCTCGGTTGGATCATTACCCGGTTCTTGGCCTTCTACCAGTAAAGCAGTCAAGAGTGACTTTAATTGTTCCCTTAGCCGCTCACTGGACTCCTCATTACGATCGATCAATTGCAGAGAGATTGAAGTAGAAGCCTCCTGTGACACGTTTGATGGAAATGAAGAAAAGAAATCAGCCGAGCAACCGTTAAATACGGAGGACGTCCAAGTTTTTTTAAGTCCTGTAGTTGATCCGTCAGAATCGACTCTCGTCCCTGGCGGAAACTGGAGAATATGGCCTTTTTATTTCAGTAGATCGAGATCAAGGGAAGGTATGCCGCCGATATTCGACGATATTAGAAATTCCAGCGTCGAAAATGGCTTAGAGAGAGATGATTATGCGGATGAAGATGCAAACCATTTTAAGCGTAAGGTAGAGAAACAAATGGTGAGGACGTTTTTGCCGACTTCCGACCAGTTGGCGTCTTTAAATCTGGTCGAAGGAAGAAACACGATAGCTTTCACATTCTCGACCAAAATGCTCGGAAAGCAGGAGGTCGATGCGAGAATTTATTTATGGAAATGGAACACTCGAATTGTCATCTCGGACGTGGACGGGACGATTACAAAATCAGATGTTCTTGGTCAGTTCATGCCCATGGTCGGAATGGATTGGTCGCAGACAGGCGTGGCTCATTTGTTTACGGCTATTAAGGAAAATGGGTATCAAATGCTTTTTCTTAGCGCTCGTGCGATCTCGCAGGCATATGTTACGAGACAATTTCTGTTCAATCTTAAGCAGGATGGGAAGGCTTTACCCGAGGGTCCAGTCGTTATATCACCGGACGGGCTCTTTCCTTCTTTATATCGAGAAGTTATTCGACGGGCTCCTCACGAGTTCAAGATCGCTTGCTTAGAGAACATCAGGGAATTGTTTCCTGCAGACTGCAATCCGTTCTACGCCGGGTTTGGAAATCGGGATACTGACGAAATCAGCTACCTCAAAGTTGGAATCCCCATCGGAAAAATCTTCATTATCAATCCTAAGGGTGAGATTACTGTCAATCGCCGAGTTGACTCAAAATCTTATACTTCCCTTCATGATCTCGTTCATGGCATCTTCCCGCCGATTGATTCAACCGAGCAGGAAGATTTTAATTCATGGAACTACTGGAAACTGCCTACTGTTTACTTAGATATCTGA 2559 42.67 MYAVERLGSYITRGVYTVSGPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTREKVVNVSVNGVEAKFPMYLNHKGEAYFLREVDDKEEDSMRGDYDSKNFAAFDGIEKSNSRVVGRTGSRRSRLLQLVFGRNSINEDGVARADSLERAEFAANLLEVKWSTNLSSDPKILKDNGVSSSALSKLDGNDARNVNISDGEINESSLSRDNTNTGRESDYPDQKPCSGVDSIVENGAVEASMIGKEGSEGTREIVYETAGQIDEVIVETTEQIANNSSKSYGSRSLVKSDGVDSFDYLEISESSALKGDDSTNTELSIKETIIEYGKDLNSSIRSDSCVQQINIVEQISDSIEGVSKTMEEEDSIFTSGSRESFGDRMLEETANSFEEQFLFSDLDVLENTKVHPLDSSFLDCLKEENDKSIIENYNLSIEEPESLIKTTSFPITIPKTNQVDVDRSVGSLPGSWPSTSKAVKSDFNCSLSRSLDSSLRSINCREIEVEASCDTFDGNEEKKSAEQPLNTEDVQVFLSPVVDPSESTLVPGGNWRIWPFYFSRSRSREGMPPIFDDIRNSSVENGLERDDYADEDANHFKRKVEKQMVRTFLPTSDQLASLNLVEGRNTIAFTFSTKMLGKQEVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPMVGMDWSQTGVAHLFTAIKENGYQMLFLSARAISQAYVTRQFLFNLKQDGKALPEGPVVISPDGLFPSLYREVIRRAPHEFKIACLENIRELFPADCNPFYAGFGNRDTDEISYLKVGIPIGKIFIINPKGEITVNRRVDSKSYTSLHDLVHGIFPPIDSTEQEDFNSWNYWKLPTVYLDI 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2474971 2479064 - Bma020751.2 Bma05g00060 82144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00060 852 SUPERFAMILY HAD-like 643 795 IPR036412 -
Bma05g00060 852 Pfam lipin, N-terminal conserved region 12 98 IPR007651 -
Bma05g00060 852 MobiDBLite consensus disorder prediction 188 234 - -
Bma05g00060 852 MobiDBLite consensus disorder prediction 188 224 - -
Bma05g00060 852 Pfam LNS2 (Lipin/Ned1/Smp2) 604 827 IPR013209 -
Bma05g00060 852 PANTHER GH19076P 1 850 - -
Bma05g00060 852 PANTHER LIPIN 1 850 IPR026058 -
Bma05g00060 852 SMART lns2 651 807 IPR031315 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00060 K15728 LPIN; phosphatidate phosphatase LPIN [EC:3.1.3.4] - jre:108987624 711.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02284 Bma-Chr1:80028619 Bma05g00060 Bma-Chr5:2474971 0 dispersed
Bma05g00060 Bma-Chr5:2474971 Bma04g00646 Bma-Chr4:6213787 5.43E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006092 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00060 Bma_Chr05 FPKM 33.563309 43.452202 31.529776 29.193075 60.717636 57.298267 60.079708 5.390263 6.45158 6.075076