Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00067 ATGGCCCTCCAAGCTATGACCTCTCCGGTGGCCCCGTCGTCTGTGTTTCAGTGCGACGATTCAAGCCTTAACTACTTGGAGCCGTGGACGAAGGGGAAGCGGTCCAAACGACCGCGTTTGGACGGTGCGACGACGGAAGATGAATATCTTGCTCTCTGTCTCGTCATGCTCGCACGCGGTGGCCGGCCGGTTTCGTCTTTACCGGAGATTGAAGCTCCGTCGGCGGCGAAGTACATCTACAAGTGTTCTGTTTGTGACAAGGCGTTTTCTTCGTACCAGGCTTTGGGTGGACACAAGGCGAGTCACCGGAAACACGTCGGCGGAGAAGATCTATCGACGTCGTCTACGGCCACGACGATCTCTGCTCTAACAGCAACCACCTCAGGCTCAGCTTCTATCGCCGGAGTAAGAACCCACGAGTGCTCTATTTGCCACAAGTCGTTCCCGACCGGCCAGGCTTTGGGCGGACACAAGCGCTGCCACTACGAAGGCGGCAATAAATCCAACAGCGCCACCTTGACCTCGTCGGAAGGAGCCGGCAGCTCCAGCCATATCCGCGGCTTCGATCTCAACCTCCCAGCTTTACCAGAATTCTCAGCGAAGTTCTTCAAATCCGGCGACGACGAGGTAGAGAGCCCTCTTCCTACAAAGAAGCCTCGTCTTCTGATACCGCCAAAAATGGAAGTCTCTCAAGATCACTGA 702 55.98 MALQAMTSPVAPSSVFQCDDSSLNYLEPWTKGKRSKRPRLDGATTEDEYLALCLVMLARGGRPVSSLPEIEAPSAAKYIYKCSVCDKAFSSYQALGGHKASHRKHVGGEDLSTSSTATTISALTATTSGSASIAGVRTHECSICHKSFPTGQALGGHKRCHYEGGNKSNSATLTSSEGAGSSSHIRGFDLNLPALPEFSAKFFKSGDDEVESPLPTKKPRLLIPPKMEVSQDH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2528079 2528780 - Bma020757.1 Bma05g00067 82151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00067 233 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Bma05g00067 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 110 IPR013087 -
Bma05g00067 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
Bma05g00067 233 Gene3D Classic Zinc Finger 78 161 - -
Bma05g00067 233 MobiDBLite consensus disorder prediction 205 233 - -
Bma05g00067 233 Pfam C2H2-type zinc finger 139 162 - -
Bma05g00067 233 Pfam C2H2-type zinc finger 80 104 - -
Bma05g00067 233 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Bma05g00067 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Bma05g00067 233 SUPERFAMILY beta-beta-alpha zinc fingers 79 161 IPR036236 -
Bma05g00067 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Bma05g00067 233 SMART c2h2final6 80 102 IPR013087 -
Bma05g00067 233 SMART c2h2final6 139 161 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00678 Bma-Chr1:6175995 Bma05g00067 Bma-Chr5:2528079 3.62E-128 dispersed
Bma05g00055 Bma-Chr5:2378669 Bma05g00067 Bma-Chr5:2528079 4.31E-171 dispersed
Bma05g00067 Bma-Chr5:2528079 Bma12g00083 Bma-Chr12:1548927 5.11E-36 dispersed
Bma08g00012 Bma-Chr8:213944 Bma05g00067 Bma-Chr5:2528079 5.19E-50 transposed
Bma08g01203 Bma-Chr8:51016016 Bma05g00067 Bma-Chr5:2528079 5.73E-38 transposed
Bma14g00657 Bma-Chr14:7096283 Bma05g00067 Bma-Chr5:2528079 1.49E-10 transposed
Bma01g02250 Bma-Chr1:79678041 Bma05g00067 Bma-Chr5:2528079 3.83E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57286 PF13912 zf-C2H2_6 1.60E-12 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00067 - - tcc:18591995 270.011