Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00069 ATGGAGTCTTTGGGTGTTTTCCCTGACGGAGAATGGGGCTCTTTCAGTGCAATTTTCAACTCTGATGAGCTCGAAATGCCTCGTTTTCTCAGACACTTTTCTTCGCCGGAAAGTTATGATGCCGGCGTCAGCTCTCCGCCGCCGATTTGCATTGATTCTCCGGCGAATATAGGTATTAGTGGGGCTAACAAGAGCTGGTTTTATTCTCTAGACGCTTTGAATACTGATTTTAACTTGACCAAACAAGATTATAGCTATAGTTATATTTCCTCTCTCGCTCCCCAACCAAATGATATTTCTTTGTTCATTGATATGGATTCTGTGGGTGAGAGAAAGGCTGGCTCTTTTTTGCCATCTTTAACTGATGTTTTAGAGGAAGATCATCATCAAGCTTTTTGTATCCATGGAGATATGGGTGGTGATGGATATGAGAATTTAGACTACAATCACCCAACGTCGACTGCCATTAATTCCAGCAACGAAGAAGAAGGACTCAAAAGGAAACTTAATGGTGGAGTGCTGAATACACACTTATCTGACAACCCAAAGAAGAAAACTCGAGTCACTCAGCAAGTACAGAAGAGTAGAAAAACTGTAGAGTCATCAAAAGCCACGTTAAAAATCAAGAAGAATTCTTCAAAAACTAGTGTCGAAGAAGACGGCAATGGAGGATCTGAAGGACAGAGCTCTAGCAGTTGCAGTACATCCGAAGATAATGCTTCACAGGAAACTAATGGTGGCGCAATTTCAGACTCTAAAAGGTGCGAAGTTCTCAACTCAAATGGAAAGACCAGAGCTGAAAGAGGATCAGCAACTGATCCACAGAGTCTCTACGCAAGAAAACGAAGAGAGAGAATAAATGAGAGACTCAGAATCTTGCAGAAACTCGTTCCCAATGGCACAAAGGTCGATATCAGCACCATGCTTGAAGAGGCAGTCCACTACGTGAAGTTTCTGCAGCTTCAAATCAAGCTCTTAAGCTCTGATGATCATTGGATGTATGCTCCAATCGCTTACAATGGAATGGACATTGGTCTTCACCAGAAGATTTCTCCAATCCTCTTCCGTTGA 1071 42.39 MESLGVFPDGEWGSFSAIFNSDELEMPRFLRHFSSPESYDAGVSSPPPICIDSPANIGISGANKSWFYSLDALNTDFNLTKQDYSYSYISSLAPQPNDISLFIDMDSVGERKAGSFLPSLTDVLEEDHHQAFCIHGDMGGDGYENLDYNHPTSTAINSSNEEEGLKRKLNGGVLNTHLSDNPKKKTRVTQQVQKSRKTVESSKATLKIKKNSSKTSVEEDGNGGSEGQSSSSCSTSEDNASQETNGGAISDSKRCEVLNSNGKTRAERGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDHWMYAPIAYNGMDIGLHQKISPILFR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2542258 2543698 + Bma020759.1 Bma05g00069 82153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00069 356 MobiDBLite consensus disorder prediction 174 255 - -
Bma05g00069 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Bma05g00069 356 Gene3D - 271 331 IPR036638 GO:0046983
Bma05g00069 356 PANTHER TRANSCRIPTION FACTOR BHLH54 4 352 - -
Bma05g00069 356 MobiDBLite consensus disorder prediction 144 255 - -
Bma05g00069 356 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Bma05g00069 356 CDD bHLH_AtIND_like 271 333 - -
Bma05g00069 356 SMART finulus 276 325 IPR011598 GO:0046983
Bma05g00069 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 352 - -
Bma05g00069 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 336 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00057 Bma-Chr5:2394198 Bma05g00069 Bma-Chr5:2542258 0 dispersed
Bma05g00069 Bma-Chr5:2542258 Bma13g00230 Bma-Chr13:3365013 1.26E-25 dispersed
Bma05g00650 Bma-Chr5:38183512 Bma05g00069 Bma-Chr5:2542258 9.05E-39 transposed
Bma14g01112 Bma-Chr14:14007691 Bma05g00069 Bma-Chr5:2542258 2.10E-22 transposed
Bma01g02271 Bma-Chr1:79860933 Bma05g00069 Bma-Chr5:2542258 2.16E-18 wgd
Bma01g02249 Bma-Chr1:79661710 Bma05g00069 Bma-Chr5:2542258 3.70E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57287 PF00010 HLH 1.10E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00069 - - qsu:112027126 270.011