Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00072 ATGGAGGGTGGCGATGGGACGGTGAGGCTTGGGGCTTTGAACATGAAGGTCGATCGTGTCGGGTTGGATATGGTTCCGGATGTATGCGTTTCATCCCCGGTGACGAGGCAGAAAGCCGCCGCCGCTAAACAAATTATAGAGAATCACTACAAGAACCATCTTCAAGCTTTACACGATCGCAAAGAGAGGCGCAGAGCACTTGAACAAAGAGCTCAAGAAGCTCGGGTGTCAACGGAGGAACAAGAAGAAATGATGAGGAATCTGGAACGTAGAGAAACTGAATATATGAGGCTGCAAAGACGCAAAGTCGGAATCGATGATTTCGAGCAGTTAACTGTTATTGGTAAAGGTGCATTTGGTGAGGTCAGGTTATGTCGTGCTATAAGTACTGGAGAGATTTTTGCCATGAAGAAACTGAAGAAGTCGGAGATGCTTAGCCGAGGCCAGGTTGAGCATGTCCGATCGGAGAGAAACTTACTTGCAGAGGTCGATAGTCGGTGCATTGTGAAACTCTTTTATTCTTTTCAAGATGCCGAATTCCTGTACCTTATCATGGAATATTTACCTGGTGGTGACATCATGACATTGCTTATGAGGAAAGATATTCTTTCTGAGAATGTTGCGCGATTTTACATTGCAGAGAGCATTCTAGCTATTCAGTCGATTCATATGCACAATTACATTCATAGGGATATAAAACCAGATAACCTGATACTGGATAAATTTGGTCATTTGAAACTTTCAGATTTTGGTTTGTGTAAGCCTATGGATGAGAAATACTCATCCATGTTTTTGGAAAATGACGAATCAACAATCCGTCGATCCAAAAACGAAATTGATGGTGATTTGGACTCGTTGATGCCAAAAGAAAAACTTCAACAGTGGAAACGGAATCGTCGAGCATTGGCCTATTCAACTGTTGGGACACTAGATTATATGGCACCTGAAGTGTTGCTTAAGAAGGGATATGGAATGGAATGTGATTGGTGGTCCTTAGGGGCTATCATGTATGAGATGTTGGTGGGATATCCACCCTTCTGTTCGGATGATCCAAGGATCACTTGTCGCAAGATAATCAATTGGAAAACTTGCCTGAAATTCCCGGAGGAACCGAAGATATCAGACGAGGCCAGGGATTTGATTAGTCACTTGCTCTGTGATGTCGAAACGAGGTTAGGGACCCGAGGAGTCGAAGAAATAAAGGCGCATGCATGGTTTGTTGGCACTCAGTGGGACAAGCTTTATGAAATCGAGGCGGCCTATAAACCGACTGTCAAAGGAGAGCTTGACACCCAGAATTTCGAGAAGTTTCCAGAAGTGGAAGATCCCCCATCTACAATTCCAACCGTAGGACCTTGGCGGAAGATGTTGACATCGAAAGACACTAATTTCATCGGGTTTACGTTTAAAAAATCAGATGTGCTTAAATCGCTCGAAACTGCTGGTGCAGATATGCAACCAAATGGATCTTCAAAGACTCCATCTCTTATTTCTTTGTTAGGTCGGATCGAGTTGGAAGAGACAGAATCGACAGAGGATGAAGAGAAGCAAGAAGGATGA 1560 43.78 MEGGDGTVRLGALNMKVDRVGLDMVPDVCVSSPVTRQKAAAAKQIIENHYKNHLQALHDRKERRRALEQRAQEARVSTEEQEEMMRNLERRETEYMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAISTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDAEFLYLIMEYLPGGDIMTLLMRKDILSENVARFYIAESILAIQSIHMHNYIHRDIKPDNLILDKFGHLKLSDFGLCKPMDEKYSSMFLENDESTIRRSKNEIDGDLDSLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFCSDDPRITCRKIINWKTCLKFPEEPKISDEARDLISHLLCDVETRLGTRGVEEIKAHAWFVGTQWDKLYEIEAAYKPTVKGELDTQNFEKFPEVEDPPSTIPTVGPWRKMLTSKDTNFIGFTFKKSDVLKSLETAGADMQPNGSSKTPSLISLLGRIELEETESTEDEEKQEG 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2579265 2583299 + Bma020762.1 Bma05g00072 82156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00072 519 Gene3D Phosphorylase Kinase; domain 1 425 435 - -
Bma05g00072 519 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 509 - -
Bma05g00072 519 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Bma05g00072 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 509 - -
Bma05g00072 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Bma05g00072 519 CDD STKc_NDR_like 106 470 - -
Bma05g00072 519 Pfam Protein kinase domain 108 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00072 519 Pfam Protein kinase C terminal domain 425 469 IPR017892 GO:0004674|GO:0005524|GO:0006468
Bma05g00072 519 Gene3D Transferase(Phosphotransferase) domain 1 305 424 - -
Bma05g00072 519 SMART pkinase_C_6 407 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bma05g00072 519 MobiDBLite consensus disorder prediction 483 497 - -
Bma05g00072 519 ProSiteProfiles AGC-kinase C-terminal domain profile. 407 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bma05g00072 519 Coils Coil 64 101 - -
Bma05g00072 519 MobiDBLite consensus disorder prediction 481 519 - -
Bma05g00072 519 SMART serkin_6 108 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00072 519 SUPERFAMILY Protein kinase-like (PK-like) 83 459 IPR011009 -
Bma05g00072 519 ProSiteProfiles Protein kinase domain profile. 108 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00072 519 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Bma05g00072 519 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00072 Bma-Chr5:2579265 Bma05g01065 Bma-Chr5:49339079 0 dispersed
Bma05g00072 Bma-Chr5:2579265 Bma09g00765 Bma-Chr9:46175670 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66489 PF00069 Pkinase 7.90E-63 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00072 K08790 - pop:7472689 858.211