Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00088 ATGGGCGAAGCTTGTGAAGATTGCGGGAAATGGGCAGAAGATATTTACTGGACGCATTTTCAGTTCACCCACTTCGCCAAAATCATCCCTGCTGGGTTTGATCGACAGCTCGTTGTACCCAGAAAATTCCTGAACAATTTGAAGAAGAAATTACCGTCTTTAGTGGTTCTAAAAGGCCCCAGTGGTGTTAATTGGACAGTTGAATTAGCTACCAACGACGACTCCTGCTATTTCAAAAGTGGTTGGACCAAGTTTGCCGAGGACCACTCTCTCAAAGCAAATGATCTTTTAATCTTCAAGTACAATGGAGACGCCCTTTTCAATGTTCTAATTTTCGACGGGATGAGCTTCTGTGAGAAGGAATCTTCGTATTTCATCGGGAAATGCAAGCATGCTGAACTTGAAACAGAGAAAACGTCCAAGGAAACCCAATTAGCGCGGGGAATTCCAGCCAACTCAAACAACGATGTTGAATGTTCTTCTGAGAATCTTATGGATGATGATGGTGTCGAGAAACATTCGACAGAAGATGGCTCCGAAGCTGTTCGACCGAAGCGCTATCGAAATGCTCGATGGAGTCCTACAGCTTATGGGGTTCTTTCTTCTATTGTGAGGCCGACCTCTCCGAAAACGATTATGACGTACCACGAGCGATACAATTCGAATCGAAGACCTGTCACCGAGAGCGAAATAGCTCGTGCCTTGTCGTTGGCCGAAGCAGCATCGACTGAAAATACATGCAGAATTGTTATGCGTCCATCTCACGTGTACAGACAATTCTATCTGGTAAAACACTTGAAATATCGTTGA 810 44.57 MGEACEDCGKWAEDIYWTHFQFTHFAKIIPAGFDRQLVVPRKFLNNLKKKLPSLVVLKGPSGVNWTVELATNDDSCYFKSGWTKFAEDHSLKANDLLIFKYNGDALFNVLIFDGMSFCEKESSYFIGKCKHAELETEKTSKETQLARGIPANSNNDVECSSENLMDDDGVEKHSTEDGSEAVRPKRYRNARWSPTAYGVLSSIVRPTSPKTIMTYHERYNSNRRPVTESEIARALSLAEAASTENTCRIVMRPSHVYRQFYLVKHLKYR 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2904291 2905357 + Bma020779.1 Bma05g00088 82172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00088 269 SUPERFAMILY DNA-binding pseudobarrel domain 20 113 IPR015300 -
Bma05g00088 269 Pfam B3 DNA binding domain 34 113 IPR003340 GO:0003677
Bma05g00088 269 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 262 IPR044837 -
Bma05g00088 269 MobiDBLite consensus disorder prediction 150 182 - -
Bma05g00088 269 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Bma05g00088 269 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 262 - -
Bma05g00088 269 MobiDBLite consensus disorder prediction 165 182 - -
Bma05g00088 269 CDD B3_DNA 24 113 IPR003340 GO:0003677
Bma05g00088 269 Gene3D - 18 118 IPR015300 -
Bma05g00088 269 SMART B3_2 25 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00088 Bma-Chr5:2904291 Bma05g00102 Bma-Chr5:3271095 8.54E-176 dispersed
Bma04g00184 Bma-Chr4:1565955 Bma05g00088 Bma-Chr5:2904291 1.77E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57289 PF02362 B3 4.80E-17 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00088 - - csv:101222600 232.646