Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00088 ATGGGCGAAGCTTGTGAAGATTGCGGGAAATGGGCAGAAGATATTTACTGGACGCATTTTCAGTTCACCCACTTCGCCAAAATCATCCCTGCTGGGTTTGATCGACAGCTCGTTGTACCCAGAAAATTCCTGAACAATTTGAAGAAGAAATTACCGTCTTTAGTGGTTCTAAAAGGCCCCAGTGGTGTTAATTGGACAGTTGAATTAGCTACCAACGACGACTCCTGCTATTTCAAAAGTGGTTGGACCAAGTTTGCCGAGGACCACTCTCTCAAAGCAAATGATCTTTTAATCTTCAAGTACAATGGAGACGCCCTTTTCAATGTTCTAATTTTCGACGGGATGAGCTTCTGTGAGAAGGAATCTTCGTATTTCATCGGGAAATGCAAGCATGCTGAACTTGAAACAGAGAAAACGTCCAAGGAAACCCAATTAGCGCGGGGAATTCCAGCCAACTCAAACAACGATGTTGAATGTTCTTCTGAGAATCTTATGGATGATGATGGTGTCGAGAAACATTCGACAGAAGATGGCTCCGAAGCTGTTCGACCGAAGCGCTATCGAAATGCTCGATGGAGTCCTACAGCTTATGGGGTTCTTTCTTCTATTGTGAGGCCGACCTCTCCGAAAACGATTATGACGTACCACGAGCGATACAATTCGAATCGAAGACCTGTCACCGAGAGCGAAATAGCTCGTGCCTTGTCGTTGGCCGAAGCAGCATCGACTGAAAATACATGCAGAATTGTTATGCGTCCATCTCACGTGTACAGACAATTCTATCTGGTAAAACACTTGAAATATCGTTGA 810 44.57 MGEACEDCGKWAEDIYWTHFQFTHFAKIIPAGFDRQLVVPRKFLNNLKKKLPSLVVLKGPSGVNWTVELATNDDSCYFKSGWTKFAEDHSLKANDLLIFKYNGDALFNVLIFDGMSFCEKESSYFIGKCKHAELETEKTSKETQLARGIPANSNNDVECSSENLMDDDGVEKHSTEDGSEAVRPKRYRNARWSPTAYGVLSSIVRPTSPKTIMTYHERYNSNRRPVTESEIARALSLAEAASTENTCRIVMRPSHVYRQFYLVKHLKYR 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2904291 2905357 + Bma020779.1 Bma05g00088 82172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00088 269 SUPERFAMILY DNA-binding pseudobarrel domain 20 113 IPR015300 -
Bma05g00088 269 Pfam B3 DNA binding domain 34 113 IPR003340 GO:0003677
Bma05g00088 269 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 262 IPR044837 -
Bma05g00088 269 MobiDBLite consensus disorder prediction 150 182 - -
Bma05g00088 269 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Bma05g00088 269 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 262 - -
Bma05g00088 269 MobiDBLite consensus disorder prediction 165 182 - -
Bma05g00088 269 CDD B3_DNA 24 113 IPR003340 GO:0003677
Bma05g00088 269 Gene3D - 18 118 IPR015300 -
Bma05g00088 269 SMART B3_2 25 115 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00088 - - - csv:101222600 232.646
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00088 Bma-Chr5:2904291 Bma05g00102 Bma-Chr5:3271095 8.54E-176 dispersed
Bma04g00184 Bma-Chr4:1565955 Bma05g00088 Bma-Chr5:2904291 1.77E-18 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006724 0 1 0 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57289 PF02362 B3 4.80E-17 CL0405 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00088 Bma_Chr05 FPKM 1.650127 0.592894 4.914594 2.909878 10.860136 9.398111 12.080217 20.430859 19.440399 22.733536