Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00091 ATGATGCAATTCTCTGAAACCCCACCCCCACCGTTGCACCAAATCAGCCCACCACCAAATTCCGCCATGAGCAAAAACCAAATTCAAAGAGGCCGGCCATGGCCTGGATTTCCCACATCCAAGGCATTGGGAAACTTCGGGGACACCAACTGCATGGAACAATTGCTAGTCCACTGCGTCAACGCCATCGAAAGCAACGATGCCACTCTCGCCCAACAGATCCTTTGGGTCCTAAACAACATAGCCCCTCCCGACGGCGACTCAAATCAGAGGCTCACCTCCGGCTTCCTTCGAGCTCTCATTTTGCGCGGAGCCAATAGCGGAAGCTGCAAAATGCTTGCAGCTATGGTGAACGCTCGTAACAATCTGGCTATCGACACCCACAAATTCTCTGTCATTGAGCTCGCTAGCTTCGTAGACCTGACACCTTGGTATAGATTCGGCTTCACTGCAGCCAATGCAGCTATCATAGACGCTATTGAAGGGTTCTCTTGCATCCATATTGTGCATTTAAGCTCAACTCATTGCATGCAAATCCCGACGCTAATCGACGCCATTGCTAGTCGTTACGAGGTTCCGCCATTGATAAAGCTCACAGTTGTTTCAGGTGCGACAGAAGATATACCCCCTATACTTGACCTTTCTTTCGACGAATTGGGTTCAAAGCTGGTGAATTTCGCAAGGTATAGAAACGTGGAGATGGAATTTAGAGTGGTTCCTTCTAATTATACCGATGGATTTGCTAACTTGCTCGAACAACTTCGATTGCAAAATTTAGTTTACGCAGAAAGTGGCGAGGCGTTAGTTATAAACTGTCACATGATGCTCCATCATATTCCAGAACAAACCCTTTCTCCAAATCAAAACATAAATCCAAACCCACTATCTTTTGAATCTTCCTCCTCGCTTCGGACAATGTTTTTGAAAGCCATTCGAAGCCTAGAGCCCACGATTGTAGTCTTAATTGATGAAGATGCCGACCTGACATCAAATAACTTAGTTAGCAGATTAAGAGCAGCCTTCAACTACTTATGGATTCCTTATGACACAATTGATACTTTTCTTCCAAAAGGAAGCCATCAGAGGCAGTGGTACGAAGCTGATATTTGCTGGAAGATTGAGAATGTGATAGCCCAAGAGGGTCTTCAGAGAGTTGAACGACTAGAACCGAAGAGCCGGTGGGTTCAGCGAATGATAAATGCAAGTTTTAGAGGGGTTTCGTTTGGGGAAGATGGTGTTGCAGAGGTGAAGTTGATGCTTGATGGGCATTCAGCTGGGTGGGGATTGAAGAAGGAAGACGATGATCTTGTGCTCACATGGAAAGGGCATAACGTTGTTTTTGCAACTGCTTGGGTGCCTGCTTAA 1365 46.23 MMQFSETPPPPLHQISPPPNSAMSKNQIQRGRPWPGFPTSKALGNFGDTNCMEQLLVHCVNAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSGFLRALILRGANSGSCKMLAAMVNARNNLAIDTHKFSVIELASFVDLTPWYRFGFTAANAAIIDAIEGFSCIHIVHLSSTHCMQIPTLIDAIASRYEVPPLIKLTVVSGATEDIPPILDLSFDELGSKLVNFARYRNVEMEFRVVPSNYTDGFANLLEQLRLQNLVYAESGEALVINCHMMLHHIPEQTLSPNQNINPNPLSFESSSSLRTMFLKAIRSLEPTIVVLIDEDADLTSNNLVSRLRAAFNYLWIPYDTIDTFLPKGSHQRQWYEADICWKIENVIAQEGLQRVERLEPKSRWVQRMINASFRGVSFGEDGVAEVKLMLDGHSAGWGLKKEDDDLVLTWKGHNVVFATAWVPA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2970523 2971887 - Bma020783.1 Bma05g00091 82175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00091 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 452 IPR005202 -
Bma05g00091 454 ProSiteProfiles GRAS family profile. 43 452 IPR005202 -
Bma05g00091 454 PANTHER SCARECROW-LIKE PROTEIN 32 10 452 - -
Bma05g00091 454 Pfam GRAS domain family 52 451 IPR005202 -
Bma05g00091 454 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01138 Bma-Chr3:15148342 Bma05g00091 Bma-Chr5:2970523 0 dispersed
Bma05g00091 Bma-Chr5:2970523 Bma09g00014 Bma-Chr9:330625 3.23E-43 dispersed
Bma05g00091 Bma-Chr5:2970523 Bma02g01308 Bma-Chr2:55213484 2.59E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57290 PF03514 GRAS 5.60E-86 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00091 - - tcc:18611261 746.503