Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00098 ATGGATTCTACTTCTAGACATCCTCTTTTTTGCTTGAAATGGCCATGGGAAATTGAACCTAAAGGTCGCAGCCCCTGTGGCATTGAGGGGCCTTGGCTGTTTAAATCTCTGCAAACCCTTGGCTCTGTTGCTAGCAATTTTGTGAATACAGTTTCAAAGGCTCCACATCCATGGGTTAGCAATACCTTCAAGTCTGTAAAGTCAGATACCCAAATCAGTCAAGTTAATTCAATGGAGTCTAGGAAGATATTAACCCAAGAGGAGCAGGGAGAGGCGGAGCAGAGAGCGTTTGCCTCTGCACTGATGAGTGGCAAAGAAGCTACTGTAATTGAATTCTATTCACCCAAATGCAGGCTTTGCAATTCCTTACTTGGTTTTGTCTTGGAGCTGGAGAATAGAAACTCAGATTGGCTAAGCATTGTGATGGCAGATGTAGAAAATGAAAAATGGCTGCCTGAGCTACTTCATTATGACATCAGATATGTTCCATGTTTTGTGATTCTGGACAAAAATGGGATGGCACTAGCTAAGACTGGTGTTCCTCACAGCCGGCAACACGTGATCGCAGGCCTTTCTCATCTTCTCAAGCTGCCGAAAAAGACTTGA 606 44.06 MDSTSRHPLFCLKWPWEIEPKGRSPCGIEGPWLFKSLQTLGSVASNFVNTVSKAPHPWVSNTFKSVKSDTQISQVNSMESRKILTQEEQGEAEQRAFASALMSGKEATVIEFYSPKCRLCNSLLGFVLELENRNSDWLSIVMADVENEKWLPELLHYDIRYVPCFVILDKNGMALAKTGVPHSRQHVIAGLSHLLKLPKKT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3214653 3215890 + Bma020792.1 Bma05g00098 82182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00098 201 SUPERFAMILY Thioredoxin-like 95 195 IPR036249 -
Bma05g00098 201 Gene3D Glutaredoxin 74 195 - -
Bma05g00098 201 PANTHER THIOREDOXIN, MITOCHONDRIAL 1 197 - -
Bma05g00098 201 PANTHER EXPRESSED PROTEIN 1 197 - -
Bma05g00098 201 Pfam Thioredoxin 93 179 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00098 - - - csin:114271126 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00098 Bma-Chr5:3214653 Bma15g00860 Bma-Chr15:22713330 3.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g823 . . . . . . . . . Cmo12g00456 . . . . . . Cpe07g00459 Bhi04g00309 . . . . . . Cla08g01537 Cam08g2033 Cec08g1608 Cco08g1743 Clacu08g1720 . Cre08g1503 . . Cone17ag1299 Cone20ag0171 . . . Cme03g02005 . . Bda08g01324 . . Bpe05g00066 . Bma05g00098 . . . Cma12g00516 . . . . . . . . . . . . . . . . . . . Lsi08g01442 Csa02g01999 Chy03g01510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009286 1 3 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00098 Bma_Chr05 FPKM 1.970522 0.0 1.794061 0.0 0.50304 0.724827 2.215857 1.133464 1.241412 2.110483