Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00099 ATGGAGATGTTTCCGGAATCAAACGGTATTACGAGGCTGAAATTTGGCGCTGTATTGCACTCTGATCCAAAATTTTCATCCACAGGAAACGACGGCGGGTTTCAGGCGATGCATCACGGCGGCGTTTCTTATGCTGGTAATGCCTTTCAAGAGCCTAACCGAGCGAGCGGCGAAGGCTCTCCTGCGACCATGTCACCGTGGAGTAAAACAACGCCGTTTTCAAATCCTCCATGGCCAGAATTTCGAGAGTACAGGCAGCCGCAGAATGCTCTTATCGGCTCCCTTATTCGAGAAGAAGGCCATATTTACTCGCTTGCTTCGTCTGGAGAGCTCTTATACACAGGCTCCGATAGCAAAAACATTCGGGTTTGGAAAAATCTTCAAGAATTTTCTGGGTTTAAATCGAGAAGCGGATTGGTCAAAGCAATTGTAATCTCCGGCGAGAGGATCTTCACGGGTCACCAAGACGGAAAGATTCGTGTCTGGATAGTATCGGACAAGAACCAGTGTATTCATAAAAGAGCCGGAACTTTACCCACTCTAAAAGACGTTTTAAGAACATCCATTCATTGGAAAAATTACGTCGAAGTTCGACGGAATCGGAGCACTCTCTGGATTAGACACTCCGATGCCATCTCTTGCATGAGCATCAGCGAAGACGAAGAGTTCCTTTACTCTGCGTCATGGGATCGAACCATGAAAGTATGGAGACTCTATGACTCGAAATGCATCGAGTCCATCCTCGTCCACGACGACGCCGTTAACTCCGTTGTCACCAGCTCCGGCGGATTGGTCTTCACCGGCTCCGCCGATGGCACCGTCAAGATTTGGCAGAGAGAAAAAATAGGAAAAGGGACGAAACATACACTCGTCCAAATTCTTCTAAAGCAAGACTCAGCAGTGACGGCCCTCGCCGTTAACGATGGTGGCTCAATCGTTTATTCCGGTTCTTCCGACGGCCTGGTTAATTTCTGGTCGTTGGAAAAGAAGTTGACTTCGAGCAACGGCGTCGTCCTCAAAGGTCACAGGCTTGCGATTCTGTGCCTCGCGGCTCATGGTAATATGGTCTTCAGCGGTTCAGCTGATAAGACCATATGCGTGTGGAGAAGAAAGGGCTTGATTCACACGTGTGTATCCGTATTGGCCGGTCACAGTGGGCCAGTGAAGTGCTTGGCCGTAGAGGATGATAAAGATTCAAAGAGACCTGATGGTGATCAAAATCAACGGTGGATGTTGTACAGTGGGAGCCTTGATAAATCAGTAAAAGTGTGGAGCGTGTGTGAGAGCGTACCTGATTACAATCAGATGGCTATGGCATCAGCAGCAGCAGAGCATGGGGTCTGA 1344 48.74 MEMFPESNGITRLKFGAVLHSDPKFSSTGNDGGFQAMHHGGVSYAGNAFQEPNRASGEGSPATMSPWSKTTPFSNPPWPEFREYRQPQNALIGSLIREEGHIYSLASSGELLYTGSDSKNIRVWKNLQEFSGFKSRSGLVKAIVISGERIFTGHQDGKIRVWIVSDKNQCIHKRAGTLPTLKDVLRTSIHWKNYVEVRRNRSTLWIRHSDAISCMSISEDEEFLYSASWDRTMKVWRLYDSKCIESILVHDDAVNSVVTSSGGLVFTGSADGTVKIWQREKIGKGTKHTLVQILLKQDSAVTALAVNDGGSIVYSGSSDGLVNFWSLEKKLTSSNGVVLKGHRLAILCLAAHGNMVFSGSADKTICVWRRKGLIHTCVSVLAGHSGPVKCLAVEDDKDSKRPDGDQNQRWMLYSGSLDKSVKVWSVCESVPDYNQMAMASAAAEHGV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3229474 3230817 + Bma020793.1 Bma05g00099 82183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00099 447 Pfam WD domain, G-beta repeat 376 425 IPR001680 GO:0005515
Bma05g00099 447 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 440 IPR045182 -
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 238 - -
Bma05g00099 447 Gene3D - 199 285 IPR015943 GO:0005515
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Bma05g00099 447 Pfam Nucleoporin Nup120/160 90 338 - -
Bma05g00099 447 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Bma05g00099 447 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Bma05g00099 447 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 278 IPR001680 GO:0005515
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 328 - -
Bma05g00099 447 CDD WD40 99 425 - -
Bma05g00099 447 MobiDBLite consensus disorder prediction 49 71 - -
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 278 - -
Bma05g00099 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 368 IPR001680 GO:0005515
Bma05g00099 447 PANTHER PROTEIN JINGUBANG 10 440 - -
Bma05g00099 447 SMART WD40_4 287 326 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 199 237 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 240 278 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 332 369 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 88 125 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 126 163 IPR001680 GO:0005515
Bma05g00099 447 SMART WD40_4 374 425 IPR001680 GO:0005515
Bma05g00099 447 Gene3D - 286 445 IPR015943 GO:0005515
Bma05g00099 447 MobiDBLite consensus disorder prediction 45 71 - -
Bma05g00099 447 SUPERFAMILY WD40 repeat-like 91 428 IPR036322 GO:0005515
Bma05g00099 447 Gene3D - 78 198 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00099 - - - cit:102609465 602.438
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00193 Bma05g00099 CCT
Bma04g00193 Bma05g00099 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00099 Bma-Chr5:3229474 Bma12g00483 Bma-Chr12:14084881 5.59E-166 dispersed
Bma05g00090 Bma-Chr5:2919448 Bma05g00099 Bma-Chr5:3229474 0 proximal
Bma10g00003 Bma-Chr10:150060 Bma05g00099 Bma-Chr5:3229474 3.05E-07 transposed
Bma04g00193 Bma-Chr4:1718721 Bma05g00099 Bma-Chr5:3229474 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00099 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 1.016535 0.0 0.555816 0.0 0.0 0.637461