Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00105 TTGTGTAGATCATCTGTGGGGATTATGGGTTGGCTTAGCAAAATTTTTAAAGCTGGCTCCAGCCATAAAATCCCGCGAGACCATTATCCATCACGGCACGAGGAGGATCCGGATTCTTGCGTTCCTTCTGTTTCTGAGGATTTAGAGAACGAGAATGAAGATATCGATCATGCTATTGCACTTTCTCTCTTGGACGAAAATCAAAAGGGTAAAAACGTGGCTGATAACCATTCTCAACTGGAAGAAGATGAACAACTTGCTAGAGCCATGCAAGAAAGCATGAATGTGGAATCTCCTCCTCCTCGACACGTAAATGGAAATATATATCAACCTTTCCCGATCTACTTCCCAATGGGGGTATCCAGGCCATGTGCTGGCTGCAACGGTGACATTGGTTATGGGCGGTATTTGAATTGCCTGAATGCATTCTGGCATCCTGAATGTTTCCGATGCCGAGCTTGTAACCAGCCAATTTCGGATTATGAGTTCTCTACTTCCGGAAATTATCCATACCACAAATCTTGCTACAAGGAGAGCTACCACCCGAAATGCGATGTTTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCGCATCCGTTTTGGGTTCAGAAATACTGCCCCTGTCACGAATATGATTCCACTTCTCGCTGTTGCAGCTGTGAGCGAATGGAGCCACACGAGACAGGATATGTTGCTTTGGACGACGGTCGAAAGCTCTGTCTCGAGTGTCTAGATTCGGCAATCATGGACACGAGAGAATGTCAACCTCTTTACTTTCAGATTCTACAATTCTATGAACGATTAAATATGAAGGTGGAGCAGGAAGTGCCCTTGCTTTTGGTTGAAAAGCAAGCATTGAACGAAGCTCGAGATGGAGAAAAGAATGGTTATCATCGAGTACCCGAGACTAGAGGGCTCTGTTTATCGGAAGAACAAATGATCAAATCTGTCTCGAGACGGCCTAAGTTTGGGGTCGGAAACAGAGCTATGAACATGATAACAGAGCCATACAAGGTAAAGCGGCGGTGTGAGGTCACTGCAATTCTTGTCCTGTATGGTTTCCCAAGGTTGCTCACTGGGTCGATTCTAGCCCACGAACTTATGCACGCGTGGCTACGACTTAACGGTTTTGGAAATCTGAGTCAAGAAGTTGAAGAAGGAATCTGTCAGGTTCTAGCTCACATGTGGTTGACTGCCGAGCTTGCATCGCACATCAATGGAGCTTCAACGTCGTCTTCCTCGTCGTCTGCGCTGAAAAAACGATCAAGACCACAATTCGAGAGAAAACTGGGTGAGTTCTTTAAACACCAGATCGAATCAGACATGTCTCCCATATATGGAATGGGATTTAGAGCTGGTCATAATGCATTAAATAAATATGGTCTTTCCAACACTCTCCAACATATTCGAATGACGGGTAGTTTTCCGTATTGA 1452 44.9 LCRSSVGIMGWLSKIFKAGSSHKIPRDHYPSRHEEDPDSCVPSVSEDLENENEDIDHAIALSLLDENQKGKNVADNHSQLEEDEQLARAMQESMNVESPPPRHVNGNIYQPFPIYFPMGVSRPCAGCNGDIGYGRYLNCLNAFWHPECFRCRACNQPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPCHEYDSTSRCCSCERMEPHETGYVALDDGRKLCLECLDSAIMDTRECQPLYFQILQFYERLNMKVEQEVPLLLVEKQALNEARDGEKNGYHRVPETRGLCLSEEQMIKSVSRRPKFGVGNRAMNMITEPYKVKRRCEVTAILVLYGFPRLLTGSILAHELMHAWLRLNGFGNLSQEVEEGICQVLAHMWLTAELASHINGASTSSSSSSALKKRSRPQFERKLGEFFKHQIESDMSPIYGMGFRAGHNALNKYGLSNTLQHIRMTGSFPY 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3318332 3320778 + Bma020801.1 Bma05g00105 82189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00105 483 MobiDBLite consensus disorder prediction 21 40 - -
Bma05g00105 483 ProSitePatterns LIM zinc-binding domain signature. 124 158 IPR001781 -
Bma05g00105 483 SMART uim 81 100 IPR003903 -
Bma05g00105 483 SMART uim 50 69 IPR003903 -
Bma05g00105 483 ProSiteProfiles LIM domain profile. 122 182 IPR001781 -
Bma05g00105 483 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 81 100 IPR003903 -
Bma05g00105 483 Pfam Protein DA1 274 478 IPR022087 -
Bma05g00105 483 SMART lim_4 123 175 IPR001781 -
Bma05g00105 483 PANTHER PROTEIN DA1-RELATED 2 9 483 IPR045218 -
Bma05g00105 483 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 149 - -
Bma05g00105 483 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 205 - -
Bma05g00105 483 MobiDBLite consensus disorder prediction 21 46 - -
Bma05g00105 483 CDD LIM_DA1 124 176 - -
Bma05g00105 483 Gene3D Cysteine Rich Protein 117 197 - -
Bma05g00105 483 Pfam LIM domain 124 178 IPR001781 -
Bma05g00105 483 PANTHER PROTEIN DA1-LIKE 9 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00105 - - - pavi:110762641 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00277 Bma-Chr3:2068891 Bma05g00105 Bma-Chr5:3318332 1.52E-159 dispersed
Bma03g01077 Bma-Chr3:13178619 Bma05g00105 Bma-Chr5:3318332 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57294 PF12315 DA1-like 5.20E-95 CL0126 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00105 Bma_Chr05 FPKM 217.661667 238.437805 170.223938 170.605942 43.666325 42.187283 42.817413 70.720291 66.212715 65.237122