Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00106 GCGACGGAATTTAGGCTCAAGAATTTTTGTAGATATACTGTTTGGCCGGGAACTTTTTCTGGTAACGGCGCTGCAACCCTCGGCGAAGGTGGTTTTCCGTTGGCACCTGGTGCGACCGTCAATCTCACCGTCCCGCCCGGATGGTCGGGCCGAGTCTGGGGCCGAACAGGCTGCAACTTCGACGCTTCTGGCGATGGAAAATGTCTGACAGGAGACTGTGGCTTCCTAAAATGCACGCTACCCGGCAAACCACCAGCCACTCTCGTCGAGTTTACTACCGGCAGCAGCAGCAATCCAATGGATTTCTACGACGTAAGCCTCGTCGATGGTTACAATGTTGGAATGGGTGTTCGGGCGATCGGCGGCACCGGAGACTGCAAGTACGCCGGCTGCTTTGCTGATTTGAACGGAAACTGCCCCTCGGAGTTACAGGTTGTAGATTCAGGATCAGTGGTGGCTTGCAAGAGCGCCTGCGCGGCCTTTAAGACGCCGCAGTTTTGCTGCACGGGCAGCTTCTCTACGCCGCAGACTTGCTCCCCAACGCAGTACTCAAAGATGTTCAAGCAGGCGTGTCCGACAGCGTATAGTTACGCTTACGACGACGCAACCAGTACTCGTACCTGCACCGGGTCGGACTACTTGATCACTTTTTGCCCATCCCGGTCACAATTATATTAA 678 55.01 ATEFRLKNFCRYTVWPGTFSGNGAATLGEGGFPLAPGATVNLTVPPGWSGRVWGRTGCNFDASGDGKCLTGDCGFLKCTLPGKPPATLVEFTTGSSSNPMDFYDVSLVDGYNVGMGVRAIGGTGDCKYAGCFADLNGNCPSELQVVDSGSVVACKSACAAFKTPQFCCTGSFSTPQTCSPTQYSKMFKQACPTAYSYAYDDATSTRTCTGSDYLITFCPSRSQLY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3341307 3341984 + Bma020802.1 Bma05g00106 82190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00106 225 PIRSF PR5 1 225 IPR001938 -
Bma05g00106 225 ProSiteProfiles Thaumatin family profile. 1 219 IPR001938 -
Bma05g00106 225 SUPERFAMILY Osmotin, thaumatin-like protein 3 220 IPR037176 -
Bma05g00106 225 Gene3D Thaumatin 2 219 IPR037176 -
Bma05g00106 225 PRINTS Pathogenesis-related protein signature 101 117 IPR001938 -
Bma05g00106 225 PRINTS Pathogenesis-related protein signature 3 15 IPR001938 -
Bma05g00106 225 PRINTS Pathogenesis-related protein signature 51 62 IPR001938 -
Bma05g00106 225 PRINTS Pathogenesis-related protein signature 209 218 IPR001938 -
Bma05g00106 225 PRINTS Pathogenesis-related protein signature 63 92 IPR001938 -
Bma05g00106 225 CDD TLP-PA 3 218 - -
Bma05g00106 225 PANTHER PATHOGENESIS-RELATED PROTEIN 5 1 219 - -
Bma05g00106 225 PANTHER OS03G0233200 PROTEIN 1 219 IPR001938 -
Bma05g00106 225 Pfam Thaumatin family 8 219 IPR001938 -
Bma05g00106 225 SMART tha2 4 219 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00106 - - - nnu:104595773 372.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00772 Bma05g00106 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00919 Bma-Chr3:9503313 Bma05g00106 Bma-Chr5:3341307 1.17E-80 dispersed
Bma05g00106 Bma-Chr5:3341307 Bma06g00093 Bma-Chr6:1413130 1.50E-78 dispersed
Bma02g00227 Bma-Chr2:2387002 Bma05g00106 Bma-Chr5:3341307 1.81E-79 transposed
Bma01g00772 Bma-Chr1:7105640 Bma05g00106 Bma-Chr5:3341307 1.17E-129 wgd
Bma05g00106 Bma-Chr5:3341307 Bma06g00144 Bma-Chr6:1895360 2.52E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00106 Bma_Chr05 FPKM 39.102303 40.252941 59.878216 64.953239 23.628828 21.086107 23.892574 35.206478 33.594269 33.804672