Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00109 ATGGATTCAAGCACCGCCGCAACAACGTTGACTCCGACGACCTCGAAAACTCCTCTTCCAGCAGCCTCCAAGGAGAAAGACTTTTTGAACCACCTCGAAGCTTACCTCGCCAAAAGAGATGGCGTCGACAAGCTCCTCAAGATCTCCAGGTACGCTACCAAAATCATTCTCGCCTCCTCTGTCTTGCCCGAATCCTTACCCCTCACTCCCCGCCTCAAGAGCTTCGAATCCAGCGTTGGAGTTAGTCGCAAGGCTTTCAGGCTCGGAAAGTTCGTCCAAGATCTTAATGCTCTCAGAAATTCGCGTTTTGATTCGAAACAAGACTTCGTTCTCGCTATGATTGCGTATGGGGGGGAGGGTGTTTACTATTTTGTTGAACAGTTTGTTTGGTTGGCTAAATCCGGTTTGATCGACAACAAACACTCCCGCAGTTTGCAAAAGATCAGCGCTTGGGCCGAGTTTGTCGGATACCTGGGGAGTATTTCGTTGAAATTGATGGATTTGAGACTGATTAACGAAGATGAAGCATGTTTAAAATCGACTATTGAGTTAATGTTAGCTAAGGGACTTGTGCATCAGGAAGAAACAAGGAAAATGAAAAAGTTGCAGGAGAAGAAGTTGATGAAGAAGCTGTCGATCATTCAAGATTTTGCAGATGGATTAATGTCTTTTGCGGACATCCGAGACAATAAGGGCCTGGGGTCCGGTCCATTTCTCTTGTCCTGTGCGGGTCTTTTATCGGCCTTGATTAGCACTCATAAGAATTGGATATCTTGCTGA 780 46.15 MDSSTAATTLTPTTSKTPLPAASKEKDFLNHLEAYLAKRDGVDKLLKISRYATKIILASSVLPESLPLTPRLKSFESSVGVSRKAFRLGKFVQDLNALRNSRFDSKQDFVLAMIAYGGEGVYYFVEQFVWLAKSGLIDNKHSRSLQKISAWAEFVGYLGSISLKLMDLRLINEDEACLKSTIELMLAKGLVHQEETRKMKKLQEKKLMKKLSIIQDFADGLMSFADIRDNKGLGSGPFLLSCAGLLSALISTHKNWISC 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3366787 3367566 + Bma020805.1 Bma05g00109 82193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00109 259 MobiDBLite consensus disorder prediction 1 22 - -
Bma05g00109 259 MobiDBLite consensus disorder prediction 1 20 - -
Bma05g00109 259 PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 22 259 - -
Bma05g00109 259 Pfam Peroxisomal biogenesis factor 11 (PEX11) 29 256 IPR008733 GO:0005779|GO:0016559
Bma05g00109 259 PANTHER PEROXISOMAL MEMBRANE PROTEIN 11A 22 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00109 - - - pop:18105013 369.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01078 Bma-Chr4:23208899 Bma05g00109 Bma-Chr5:3366787 7.95E-07 dispersed
Bma05g00109 Bma-Chr5:3366787 Bma14g02122 Bma-Chr14:44797090 6.00E-29 dispersed
Bma05g00109 Bma-Chr5:3366787 Bma05g00969 Bma-Chr5:48147734 5.49E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g902 . . . . . . . . Cmo05g00235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00079 . Bma05g00109 . . . . . . . Cpe11g00188 . . . . . . . . . . . . . . . . Csa02g02033 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00109 Bma_Chr05 FPKM 20.664137 21.437983 27.755924 28.15661 43.787685 43.764126 44.456184 2.824197 2.358658 2.573667