Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00124 ATGGATGTTGGTGAGCTAAACAAAGAAACGAGAACACCAGGCGGGTCGCTCTCTTCCATATTTGCCCACCTCATCGGAGAATCTTCCGCCGGAGATGACGCCAGAAGATTATCAGAAGCAACTCACAATTGCGTTAATTTTCCTCATCTTCTTCGCCAAGAATCACCCGGCCAACAACGAGGCATTGTTTCCGAACGACTAACTTTACCAGAAGAGAATATTGCTTCGTGTCATGGTAGATCTAAACCGAGAAACTCACCTGCTGGTGTCGTTAGATATGGGGATTGTCTAAAGAACCACGCGGCGAACACCGGCGGTAACATTTACGACGGCTGTGGGGAGTTCATACCGAAAGGAGAAAACGGAACCCTAGAAGCTTTGAAATGCGCTGCTTGCGAGTGCCACAGAAATTTCCACCGGAAAGAAGTAGACGGCGAGCGCCAATTGATGAGTCCAAGCTCGAGAAGAACCATAGTCCTCAATCACCTGCAGCTTCCGCCGCCATTTTCGTCGCCCCACCACCATAAATTCTCAATAGGCGGCCTGAATTTCCACTCAAGCCCTACCGCTCCTATCGTCACGCCTATGAACGTCGCTTTCGGCGCAAACGAGTCATCAAGCGAAGATCTAAACGTGTTTCAGTCCAACGCAGAAGCAAATACATACCCGCCATTTTTTCCCTCAAAGAAAAGGTTCAGAACGAAGTTCACTCAAGAACAGAAGAACAAAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAGACGAACAAGAAGTAGACAAGTTCTGCGCTGAAGTTGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAACAACAAGACGAGCACCATTAAAAAGCAAAACGAGAATCATGATCCAATCTTGGACATAACTGGAGCAGATGATGAAATGATTGACTCGGAAAAGTTAGAACAGAGAAGCAGATAA 963 46.73 MDVGELNKETRTPGGSLSSIFAHLIGESSAGDDARRLSEATHNCVNFPHLLRQESPGQQRGIVSERLTLPEENIASCHGRSKPRNSPAGVVRYGDCLKNHAANTGGNIYDGCGEFIPKGENGTLEALKCAACECHRNFHRKEVDGERQLMSPSSRRTIVLNHLQLPPPFSSPHHHKFSIGGLNFHSSPTAPIVTPMNVAFGANESSSEDLNVFQSNAEANTYPPFFPSKKRFRTKFTQEQKNKMLEFAEKVGWRMQKQDEQEVDKFCAEVGVKRQVLKVWMHNNKTSTIKKQNENHDPILDITGADDEMIDSEKLEQRSR 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3902942 3903904 + Bma020827.1 Bma05g00124 82208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00124 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 61 292 - -
Bma05g00124 320 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 229 285 IPR006455 -
Bma05g00124 320 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Bma05g00124 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 61 292 - -
Bma05g00124 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
Bma05g00124 320 SUPERFAMILY Homeodomain-like 221 287 IPR009057 -
Bma05g00124 320 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Bma05g00124 320 MobiDBLite consensus disorder prediction 292 320 - -
Bma05g00124 320 Gene3D - 216 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00124 - - - csv:101216040 333.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00760 Bma05g00124 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00888 Bma-Chr1:8344246 Bma05g00124 Bma-Chr5:3902942 1.69E-42 dispersed
Bma02g00294 Bma-Chr2:3402281 Bma05g00124 Bma-Chr5:3902942 3.69E-14 dispersed
Bma02g00312 Bma-Chr2:3747896 Bma05g00124 Bma-Chr5:3902942 1.78E-43 dispersed
Bma03g00988 Bma-Chr3:10644405 Bma05g00124 Bma-Chr5:3902942 5.07E-61 dispersed
Bma05g00124 Bma-Chr5:3902942 Bma09g00128 Bma-Chr9:3877661 4.08E-49 dispersed
Bma14g01426 Bma-Chr14:27153876 Bma05g00124 Bma-Chr5:3902942 3.95E-43 dispersed
Bma12g00035 Bma-Chr12:912067 Bma05g00124 Bma-Chr5:3902942 9.69E-57 transposed
Bma01g00760 Bma-Chr1:6996925 Bma05g00124 Bma-Chr5:3902942 1.29E-129 wgd
Bma05g00124 Bma-Chr5:3902942 Bma06g00120 Bma-Chr6:1632572 4.83E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57295 PF04770 ZF-HD_dimer 7.00E-28 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00124 Bma_Chr05 FPKM 12.826189 11.218091 3.099029 3.535423 45.223007 40.713848 48.052059 6.853825 6.251912 6.211485