Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00124 | ATGGATGTTGGTGAGCTAAACAAAGAAACGAGAACACCAGGCGGGTCGCTCTCTTCCATATTTGCCCACCTCATCGGAGAATCTTCCGCCGGAGATGACGCCAGAAGATTATCAGAAGCAACTCACAATTGCGTTAATTTTCCTCATCTTCTTCGCCAAGAATCACCCGGCCAACAACGAGGCATTGTTTCCGAACGACTAACTTTACCAGAAGAGAATATTGCTTCGTGTCATGGTAGATCTAAACCGAGAAACTCACCTGCTGGTGTCGTTAGATATGGGGATTGTCTAAAGAACCACGCGGCGAACACCGGCGGTAACATTTACGACGGCTGTGGGGAGTTCATACCGAAAGGAGAAAACGGAACCCTAGAAGCTTTGAAATGCGCTGCTTGCGAGTGCCACAGAAATTTCCACCGGAAAGAAGTAGACGGCGAGCGCCAATTGATGAGTCCAAGCTCGAGAAGAACCATAGTCCTCAATCACCTGCAGCTTCCGCCGCCATTTTCGTCGCCCCACCACCATAAATTCTCAATAGGCGGCCTGAATTTCCACTCAAGCCCTACCGCTCCTATCGTCACGCCTATGAACGTCGCTTTCGGCGCAAACGAGTCATCAAGCGAAGATCTAAACGTGTTTCAGTCCAACGCAGAAGCAAATACATACCCGCCATTTTTTCCCTCAAAGAAAAGGTTCAGAACGAAGTTCACTCAAGAACAGAAGAACAAAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAGACGAACAAGAAGTAGACAAGTTCTGCGCTGAAGTTGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAACAACAAGACGAGCACCATTAAAAAGCAAAACGAGAATCATGATCCAATCTTGGACATAACTGGAGCAGATGATGAAATGATTGACTCGGAAAAGTTAGAACAGAGAAGCAGATAA | 963 | 46.73 | MDVGELNKETRTPGGSLSSIFAHLIGESSAGDDARRLSEATHNCVNFPHLLRQESPGQQRGIVSERLTLPEENIASCHGRSKPRNSPAGVVRYGDCLKNHAANTGGNIYDGCGEFIPKGENGTLEALKCAACECHRNFHRKEVDGERQLMSPSSRRTIVLNHLQLPPPFSSPHHHKFSIGGLNFHSSPTAPIVTPMNVAFGANESSSEDLNVFQSNAEANTYPPFFPSKKRFRTKFTQEQKNKMLEFAEKVGWRMQKQDEQEVDKFCAEVGVKRQVLKVWMHNNKTSTIKKQNENHDPILDITGADDEMIDSEKLEQRSR | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3902942 | 3903904 | + | Bma020827.1 | Bma05g00124 | 82208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00124 | 320 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 61 | 292 | - | - | |
Bma05g00124 | 320 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 229 | 285 | IPR006455 | - | |
Bma05g00124 | 320 | Pfam | ZF-HD protein dimerisation region | 91 | 143 | IPR006456 | - | |
Bma05g00124 | 320 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 5 | 61 | 292 | - | - | |
Bma05g00124 | 320 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 93 | 142 | IPR006456 | - | |
Bma05g00124 | 320 | SUPERFAMILY | Homeodomain-like | 221 | 287 | IPR009057 | - | |
Bma05g00124 | 320 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 92 | 143 | IPR006456 | - | |
Bma05g00124 | 320 | MobiDBLite | consensus disorder prediction | 292 | 320 | - | - | |
Bma05g00124 | 320 | Gene3D | - | 216 | 289 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00760 | Bma05g00124 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00888 | Bma-Chr1:8344246 | Bma05g00124 | Bma-Chr5:3902942 | 1.69E-42 | dispersed | |
Bma02g00294 | Bma-Chr2:3402281 | Bma05g00124 | Bma-Chr5:3902942 | 3.69E-14 | dispersed | |
Bma02g00312 | Bma-Chr2:3747896 | Bma05g00124 | Bma-Chr5:3902942 | 1.78E-43 | dispersed | |
Bma03g00988 | Bma-Chr3:10644405 | Bma05g00124 | Bma-Chr5:3902942 | 5.07E-61 | dispersed | |
Bma05g00124 | Bma-Chr5:3902942 | Bma09g00128 | Bma-Chr9:3877661 | 4.08E-49 | dispersed | |
Bma14g01426 | Bma-Chr14:27153876 | Bma05g00124 | Bma-Chr5:3902942 | 3.95E-43 | dispersed | |
Bma12g00035 | Bma-Chr12:912067 | Bma05g00124 | Bma-Chr5:3902942 | 9.69E-57 | transposed | |
Bma01g00760 | Bma-Chr1:6996925 | Bma05g00124 | Bma-Chr5:3902942 | 1.29E-129 | wgd | |
Bma05g00124 | Bma-Chr5:3902942 | Bma06g00120 | Bma-Chr6:1632572 | 4.83E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57295 | PF04770 | ZF-HD_dimer | 7.00E-28 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00124 | - | - | csv:101216040 | 333.954 |