Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00129 ATGGGCGCGGAATCTTTCCCTAAGAATGGCTCCGATGACCCTCTCATTCTCGGCCTCCAACCCTCTGCGCTCATCGACCACGTTGCTTGCGTCGATTGGTCCCTCCTTGATCAAATCCCCGGTGACCGCGGCGGTTCTGTTCCGGTTGCTAAGGAGGAACTTGAACATATTTTAATGGAGGTGAAAACTCATTCACTATCCTCCCCCGATAATTCACCTCTTATGAAGACAATGGCTGGGGGAAGTGTTGCCAATACAATTAGAGGGCTGAGTGCTGGTTTTGGAGTCAGCTGTGGTTTAATTGGGGTCCGAGGGAATGATGATCAAGGCAACTTGTTTGCTAGAAACATGAGCTCTAATGGAGTAAATCTCTCCAGGTTAAGATTGAAAACAGGTTCCACAGCTCAGTGTGTTTGCTTGGTTGATGCTTTGGGAAACCGCACAATGCGTCCATGTCTCTCCAGTGCTGTTAAAATCCAGGCAGATGATTTGACTCGAGAGGATCTTAAAGGTTCTAAGTGGTTGATCATGAGATTTGGAAAAATTAACTTGGAAGTGATTCAAGCTGCCATACAAATCGCAAAACAGGAGAATGTTTCTGTGTCTTTGGATTTGGCGAGTTTTGAGATGGTTCGAGACTTCAGATTACCTCTTCTTCAATTATTGGAGTCGGGTGATATCGACCTTTGCTTTGCCAATGAGGATGAGGCGAAAGAGTTGTTAAGTTGTGAACAGAATGCAGATCCTGAGGTTGCATTAGAATATCTGGCAAAACACTGCCAATGGGCCGTGGTGACACTAGGGCCCAATGGATGCATAGCAAAACATGGAAAAGAGATCGTCAGAGTTCCGGCCATAGGGGGAGGAAAGCCAAGAGATGCAACCGGAGCAGGAGACTTGTTTGCAAGTGGGTTTATATATGGATTAGTGAAGGGATTATGTCTAGAGAAGTGCTGCCAAATAGGTTCGTGCAGTGGAGGGTCTGTTATTCGCTCCCTGGGCGGGGAGGTGACTCCCGAGAATTGGCAGTGGATGCATAAACAAATGCAGATGAAGGGCCTTCTTCTTCCTGATGTCTGCAAATAG 1086 46.87 MGAESFPKNGSDDPLILGLQPSALIDHVACVDWSLLDQIPGDRGGSVPVAKEELEHILMEVKTHSLSSPDNSPLMKTMAGGSVANTIRGLSAGFGVSCGLIGVRGNDDQGNLFARNMSSNGVNLSRLRLKTGSTAQCVCLVDALGNRTMRPCLSSAVKIQADDLTREDLKGSKWLIMRFGKINLEVIQAAIQIAKQENVSVSLDLASFEMVRDFRLPLLQLLESGDIDLCFANEDEAKELLSCEQNADPEVALEYLAKHCQWAVVTLGPNGCIAKHGKEIVRVPAIGGGKPRDATGAGDLFASGFIYGLVKGLCLEKCCQIGSCSGGSVIRSLGGEVTPENWQWMHKQMQMKGLLLPDVCK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3995518 3998106 + Bma020833.1 Bma05g00129 82213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00129 361 CDD adenosine_kinase 14 334 - -
Bma05g00129 361 PANTHER CARBOHYDRATE KINASE-LIKE 13 352 - -
Bma05g00129 361 Gene3D - 20 338 IPR029056 -
Bma05g00129 361 Pfam pfkB family carbohydrate kinase 75 335 IPR011611 -
Bma05g00129 361 PANTHER SUGAR KINASE 13 352 - -
Bma05g00129 361 SUPERFAMILY Ribokinase-like 22 335 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00129 - - - pper:18789808 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00129 Bma-Chr5:3995518 Bma12g01291 Bma-Chr12:45853510 1.00E-13 dispersed
Bma05g00129 Bma-Chr5:3995518 Bma08g00147 Bma-Chr8:1882193 2.13E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g967 . . . . . . . . Cmo05g00262 Cmo12g00406 . . . Car12g00431 . . Cpe07g00408 Bhi04g00190 . . . Hepe10g0623 . . Cla08g01471 Cam08g1959 Cec08g1534 Cco08g1672 Clacu08g1649 . Cre08g1434 Cone4ag1920 Cone7ag1832 . . . . . Cme03g01937 Blo17g00786 . Bda08g01276 . . Bpe05g00101 . Bma05g00129 . . . Cma12g00456 Cma05g00257 Car05g00214 . Cpe11g00212 . . . . . . . . . . . . . . . Lsi08g01381 Csa02g02070 Chy03g01442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006701 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00129 Bma_Chr05 FPKM 8.00941 7.570138 2.162281 2.772158 12.375338 9.711394 10.084513 3.753145 4.068012 3.299481