Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00135 ATGGTTAGCCATGACTCCCCTCCGAACCCAGGTTCAAATATTCTCCACCAGTTCATAGTTTCAGACTCTGTTTCTTCCCAAACCCAGTTTGATCACCCACATTTTGATGCTTATGGCTCTGACTTGAGAGGACACGACTCATTTCATCACCCAACTATTCAGTCACTCGGAGAAAGAATGTCTAGATCTATTGATCTTGTGCAAACTCCTCCAATGGCGGAAGATTCTCATATCAGCCATACTGCACATCTTATGAACCTTCTTGGAGCAGCAAGTGAGGCTAGCCATCGAGTTCGTGGTCTCTCACTTTCTCTCAGCTCCCACATGACCTTAAATTCCAATCTCATTACTCCAAATCACTTCGTATGTGGAGGAAACGGAAGAGAAATTGGCGATTTTGAAGCTAACGAGAATTATTCTTTGATGGATAGAGCTTTTGCTTCATCTTCAAACTCTATGCGTAGTAGCCCTGCAGAGTTTTTCGGTTCAGTTCTGGGTAATTCAAGATACCTTAAACCGACTCAATCGCTACTCGAAGAAATCGTCAATGTTAATGGCAAAATTGTCGATCTAGACAGTGAGTTTGATAGAGGTAGAAGAGGATCACTTGGTTTATCTGCAGATTTAAGAGCAGAATTATGCAGTAATCTTCCATTTTCGGCCGAGAAACAAGAAAACCAGCTTCTAATCGCGAAGCTTATCGACTTATTGGAGGAGGTCGAGGGTCGATTCGAGAAGTACTGTCATCAAATGGAAGGAATTGTACATTCATTTGAAGTTATAGCTGGTTATGGTGCAGCTAAATCTTACACTGCTCTCGCACTTCAAGCAATGTCTAGGCATTTCTTCAGCCTAAGAAGTGCTATAATTTCTCAGATAAATCTCGAAAAAAGAAGACTTCTCCGAGGCTTACCGAAAATCAGTGCCGGTTTATCGCAGCTTAGCTTGTTCGATAGAGGAAACCAGAGCAACCGAATCGCTCTTCAGCAGCTCGGAATGATTCATGGCCAAAGACAAGCATGGAGGCCAATCAGAGGCTTACCGGAGACCTCTGTGACGATACTTCGGTCCTGGCTTTTCGAGCATTTTCTCCACCCCTACCCAAATGATTCGGAAAAGCTAATGTTGTCTTCTCAAACTGGCCTGACCAAGAATCAAGTTTCGAATTGGTTTATAAATGCCCGGGTTCGGCTGTGGAAGCCGATGATAGAGGAGATGTACAAAGAAGAATTTGGAGAGTCTTCAGAAGACTCCAATCCATTGGCTGGTGGTTCCATGGCCGGAGAAAGTTTTACAGATTATGCAGAGGATTGA 1314 43.53 MVSHDSPPNPGSNILHQFIVSDSVSSQTQFDHPHFDAYGSDLRGHDSFHHPTIQSLGERMSRSIDLVQTPPMAEDSHISHTAHLMNLLGAASEASHRVRGLSLSLSSHMTLNSNLITPNHFVCGGNGREIGDFEANENYSLMDRAFASSSNSMRSSPAEFFGSVLGNSRYLKPTQSLLEEIVNVNGKIVDLDSEFDRGRRGSLGLSADLRAELCSNLPFSAEKQENQLLIAKLIDLLEEVEGRFEKYCHQMEGIVHSFEVIAGYGAAKSYTALALQAMSRHFFSLRSAIISQINLEKRRLLRGLPKISAGLSQLSLFDRGNQSNRIALQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLSSQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPLAGGSMAGESFTDYAED 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4158704 4160270 + Bma020842.1 Bma05g00135 82219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00135 437 SMART prehox3 161 291 IPR006563 -
Bma05g00135 437 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Bma05g00135 437 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 419 - -
Bma05g00135 437 CDD homeodomain 341 402 IPR001356 GO:0003677
Bma05g00135 437 MobiDBLite consensus disorder prediction 410 437 - -
Bma05g00135 437 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Bma05g00135 437 SUPERFAMILY Homeodomain-like 347 408 IPR009057 -
Bma05g00135 437 Gene3D - 337 416 - -
Bma05g00135 437 SMART HOX_1 341 405 IPR001356 GO:0003677
Bma05g00135 437 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 419 - -
Bma05g00135 437 Pfam Associated with HOX 164 289 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00222 Bma05g00135 CCT
Bma04g00222 Bma05g00135 ECH
Bma01g00745 Bma05g00135 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00745 Bma-Chr1:6871474 Bma05g00135 Bma-Chr5:4158704 0 dispersed
Bma05g00135 Bma-Chr5:4158704 Bma10g00129 Bma-Chr10:1167298 2.08E-66 dispersed
Bma01g02340 Bma-Chr1:81010313 Bma05g00135 Bma-Chr5:4158704 6.54E-72 wgd
Bma04g00222 Bma-Chr4:1894730 Bma05g00135 Bma-Chr5:4158704 3.20E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57296 PF07526 POX 8.40E-34 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00135 - - mnt:21404745 521.931