Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00141 AGAAGGTTCTCTGAAAACCATAGTTTCAACGCAATCAAATGTAGACTTGCAAAGCCCAAGGAATCTCCTTCAAAAGCTGCTACATTTACAACGGAACCTCACAAGTTTTTTGATCAGGCAATAATCACAGTTCGGTCAGGAGACGGAGGCCATGGGGCAATTCTCAGTTTGCCTAATCAACAATCGAGTAAGTCACATGTTAAACATGCCAGCGAGAAGACAAAGAGAAAGAGCTCGTACAAAAGGGATTTTGATGGGTCGCTGATTCTTCCAAGTGGTGGGCGTGGTGGAGACGTTGTAATCTTTGCAGACGAGGGGAAAGATTCATTGCTGGAGTTTCATACGAAAAGTCGTCATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGTGTCTTGACTTCACAATTACATGACGGATTTAATGGTCCAACCCTTCGCATTCCTGTACCCTTAGGTACAGTTGTAAGACTAAAAAAGGGGAAATTATTGGCCGATCTAGAGCATCCAGGTGACGAAGTTGTTGTTGCCAGAGGTGGACAAGGAGGGACTAGCCTGGTTGAAATGCCTGAGCATAGAAGGAAAAAGTTGATGGCTTTAACTGCAAATGTGATGAGGGATGAAAGTGACAAGGTTTTAGTTATTGGTCAACCGGGGGAAGAAGTCAGTTTGGAGCTTATTCTCCGAGTTGTTGCTGATGTTGGTCTCGTTGGACTTCCCAATGCTGGGAAATCAACTCTTTTGGCAGCTATTACAAAAGCAAAACCTGATATTGCTGATTATCCTTTCACAACGTTAATGCCAAACCTTGGTCGCCTTGATGGGGATCCTACGCTTGGGGCTGGAATGTATTTATCAGAAGCAACATTAGCAGATTTGCCTGGCCTTATTGAAGGTGCTCACTTGGGAAAGGGTCTTGGTCGAAATTTCTTGAGGCACTTGAGAAGAACTCGACTCTTAGTCCACGTTGTTGATGCTGCTGTTGGGAACCCCATAGAAGATTATAGAACTGTCAAAGAAGAGTTACGAATGTACAATCCTAATTACCTTGAACGACCATATATCGTGGTGTTAAACAAAATTGACCTTCCTGAGGGAAGAGAGAGACTTTCATTTTTGATAGAGGAGATAGCAAATATTGGAAGTGATACAGTAGCTTCAAAGTCAGAAATGAACTTTGAGGATACTGATCAATTGTCACCATCAAAAGGTGGTCATTCCGATGTTGAAATAAAGAATAAAAACATCGAGGACTATCCCCGTCCACTTTCTGTTGTAGGAGTCAGTGTCCTGAAAGGTATGGGGTTGAATGAGATGTTGAAGGAGATAAGAGCAGCCTTAAGGAAGTGCAGGGATTAA 1359 42.83 RRFSENHSFNAIKCRLAKPKESPSKAATFTTEPHKFFDQAIITVRSGDGGHGAILSLPNQQSSKSHVKHASEKTKRKSSYKRDFDGSLILPSGGRGGDVVIFADEGKDSLLEFHTKSRHNAKRGGNVDAMGVLTSQLHDGFNGPTLRIPVPLGTVVRLKKGKLLADLEHPGDEVVVARGGQGGTSLVEMPEHRRKKLMALTANVMRDESDKVLVIGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITKAKPDIADYPFTTLMPNLGRLDGDPTLGAGMYLSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAVGNPIEDYRTVKEELRMYNPNYLERPYIVVLNKIDLPEGRERLSFLIEEIANIGSDTVASKSEMNFEDTDQLSPSKGGHSDVEIKNKNIEDYPRPLSVVGVSVLKGMGLNEMLKEIRAALRKCRD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4284941 4289139 + Bma020850.1 Bma05g00141 82225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00141 452 Coils Coil 436 452 - -
Bma05g00141 452 Pfam GTP1/OBG 92 229 IPR006169 -
Bma05g00141 452 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 18 452 - -
Bma05g00141 452 Gene3D - 231 452 IPR027417 -
Bma05g00141 452 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 18 452 IPR045086 GO:0003924|GO:0005525
Bma05g00141 452 SUPERFAMILY Obg GTP-binding protein N-terminal domain 35 196 IPR036726 -
Bma05g00141 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 447 IPR027417 -
Bma05g00141 452 ProSitePatterns GTP1/OBG family signature. 292 305 IPR006074 GO:0005525
Bma05g00141 452 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 232 448 IPR031167 GO:0005525
Bma05g00141 452 TIGRFAM small_GTP: small GTP-binding protein domain 233 380 IPR005225 GO:0005525
Bma05g00141 452 Pfam 50S ribosome-binding GTPase 233 360 IPR006073 GO:0005525
Bma05g00141 452 CDD Obg 232 399 IPR031167 GO:0005525
Bma05g00141 452 MobiDBLite consensus disorder prediction 56 79 - -
Bma05g00141 452 PIRSF GTP-binding_obg 85 444 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bma05g00141 452 PIRSF GTP-binding_obg 33 65 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bma05g00141 452 ProSiteProfiles Obg domain profile. 34 231 IPR006169 -
Bma05g00141 452 PRINTS GTP1/OBG GTP-binding protein family signature 255 273 IPR006073 GO:0005525
Bma05g00141 452 PRINTS GTP1/OBG GTP-binding protein family signature 234 254 IPR006073 GO:0005525
Bma05g00141 452 PRINTS GTP1/OBG GTP-binding protein family signature 307 325 IPR006073 GO:0005525
Bma05g00141 452 PRINTS GTP1/OBG GTP-binding protein family signature 290 305 IPR006073 GO:0005525
Bma05g00141 452 Gene3D GTP1/OBG domain 35 230 IPR036726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00141 - - - jre:108991389 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00885 Bma-Chr2:47323914 Bma05g00141 Bma-Chr5:4284941 1.38E-29 dispersed
Bma05g00141 Bma-Chr5:4284941 Bma14g00846 Bma-Chr14:9424711 1.71E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00141 Bma_Chr05 FPKM 21.903103 25.032507 8.245007 11.148694 7.97907 7.267438 7.223892 16.064161 15.59626 17.54459