Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00143 ATGGATGTGGGTGGGAATAGGCATCAGGTGAAGAAGGTGAAGCCTGCGCAGGGTAGTTCTAGGAAAGGTTGCATGAGAGGCAAGGGCGGGCCTGAAAATGCGGCCTGCGCTTACAAAGGCGTCCGGCAGAGAACTTGGGGCAAATGGGTCGCTGAAATACGCGAACCCAATAGAGGAAATCGCCTCTGGTTAGGCACGTTTGACACTTCTCATGAAGCAGCTGTGGCCTACGATGCTGCCGCTCGTAAACTCTACGGCTCCAATGCAAAGCTGAATTTGCCTGATCTGTGCCTTACCCATCATTATCCACTCCATTCTGCGGATACCCAGATGAGCCAAATAGACTTCCAGCCCCAGTTATTGCTTGATTCAGACGCTGCTGCTTCTTCTACTTCAGTCTACGATGGCGGCTCTATCTCGTCTTCTTGTTATGAAAAGGGCGATTCTTGTGGAGACAACGTTGGCAATTGTGGCAAGCAACTCGGTGAAGGGATTGAAGGGCTATGGCGGAGCATGAGCTTGAGCTTTGACGACTCCTTGTGGGCAGAAGCTGCAATGTCTTTGAACTTTCCAGTAATGGAAGACGATGGGAGAGGGTTGGACAGTTTACAGTATTGGTGCATGTAA 627 50.72 MDVGGNRHQVKKVKPAQGSSRKGCMRGKGGPENAACAYKGVRQRTWGKWVAEIREPNRGNRLWLGTFDTSHEAAVAYDAAARKLYGSNAKLNLPDLCLTHHYPLHSADTQMSQIDFQPQLLLDSDAAASSTSVYDGGSISSSCYEKGDSCGDNVGNCGKQLGEGIEGLWRSMSLSFDDSLWAEAAMSLNFPVMEDDGRGLDSLQYWCM 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4315509 4316135 + Bma020853.1 Bma05g00143 82227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00143 208 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 5 198 - -
Bma05g00143 208 MobiDBLite consensus disorder prediction 1 30 - -
Bma05g00143 208 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Bma05g00143 208 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 198 - -
Bma05g00143 208 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Bma05g00143 208 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00143 - - - tcc:18591467 232.261
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02343 Bma05g00143 CCT
Bma04g00223 Bma05g00143 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00143 Bma-Chr5:4315509 Bma10g00201 Bma-Chr10:1794138 8.84E-35 dispersed
Bma08g01076 Bma-Chr8:49798943 Bma05g00143 Bma-Chr5:4315509 2.23E-35 transposed
Bma01g02343 Bma-Chr1:81023072 Bma05g00143 Bma-Chr5:4315509 1.31E-51 wgd
Bma04g00223 Bma-Chr4:1900041 Bma05g00143 Bma-Chr5:4315509 5.38E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1024 . Blo12g00898 Bda01g00512 Bda03g00273 Bpe02g00370 Bpe04g00227 Bma04g00223 Bma01g02343 Cmo05g00279 Cmo12g00388 Cma01g01938 . . . . . Cpe07g00392 Bhi04g00212 . . . Hepe10g0599 . . Cla08g01453 Cam08g1938 Cec08g1512 Cco08g1651 Clacu08g1628 . Cre08g1414 Cone4ag1944 Cone7ag1858 . . Lsi04g01710 Csa03g04249 Chy04g00464 Cme03g01916 Blo17g00769 . Bda08g01252 . . Bpe05g00118 . Bma05g00143 . Cmo01g02000 . Cma12g00437 Cma05g00274 . . Cpe11g00227 . . . . . . . . Cla05g01904 Cam05g2040 Cec05g2048 Cco05g2104 Clacu05g2032 Cmu05g1912 Cre05g2034 Lsi08g01358 . Chy03g01419 Cme04g00507
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002352 3 2 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57298 PF00847 AP2 2.50E-14 CL0081 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00143 Bma_Chr05 FPKM 1.963311 1.802474 0.0 0.0 0.0 0.0 0.324527 0.0 0.0 0.0