Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00147 ATGGAGCGAGTGGCAATCCTTGCTCTTCTTCTCGTCTATCTTGTTTCAGTAGCCGCTACCGCTTACTCCATAGATTCCGATAACGTTGGTGATGAAGGAGATTCGCTGATTCGCCAGGTTGTATTCGAAGGCGAGGATCAATTGTTAACCTATGAGAGCCACTTTGCGAACTTCAAAGAGAAGTTCGGTAAGAAGTACGCCACTCAAGAAGAGCATGATTACAGGTTCATAATATTCAGGAAGAATCTCCGACGAGCGAGGCTCCATCAGAAGCTCGATCCTGACGCCGTACATGGCGTCACTAAGTTCTCCGATCTAACCGTCGCCGAGTTTCGCCAGCAGTTCCTTGGCCTCAAGCGTGTACGACTCCCTGCTGATGCTCACAAGGCTCCCATCCTCCCTACGAATGACCTTCCTTCCGATTTTGATTGGCGCGACCTAGGCGCCGTCACTCCGGTCAAAGACCAGGGTTCTTGCGGATCTTGCTGGTCGTTTAGTGCGGCTGGAGCATTGGAAGGAGCTCATTTTTTGTCAACTGGAGAGCTTGTCAGTTTGAGCGAACAACAGCTCGTGGATTGTGATCATGAGTGTGATCCAGAACAAACCGGTGCTTGTGACGCGGGATGTAACGGCGGCCTGATGACCACGGCCTTGGAGTATATACTTAAGGTGGGTGGATTAGAGAAGGAGGAAGACTATCCATACACCGGGTCCGACAGAGGAATTTGCAAATTTGACAAGAGTAAGGCTGTCGCCTCTGTATCCAACTTCAGCGTTGTTTCCATGGATGAAGATCAAATTGCAGCAAATTTGGTGAAGAACGGCCCTCTAGCAGTTGGAATCAATGCAGTTTTCATGCAGACATACATTAAAGGTGTTTCTTGCCCATACATATGCTCAAAGAAACTTTTAGATCATGGGGTGCTTCTTGTAGGATATGGCTCTGCTGGTTATGCACCCATAAGGTTTAAAGACAAGGCTTACTGGATCATCAAGAACTCGTGGGGAGAGGATTGGGGAGAGAATGGCTTCTACAAAATCTGTAGGGGTAAGAACATATGCGGGGTGGACTCCATGGTTTCAACAGTTGCTGCTTCTACTCTGTGA 1107 48.42 MERVAILALLLVYLVSVAATAYSIDSDNVGDEGDSLIRQVVFEGEDQLLTYESHFANFKEKFGKKYATQEEHDYRFIIFRKNLRRARLHQKLDPDAVHGVTKFSDLTVAEFRQQFLGLKRVRLPADAHKAPILPTNDLPSDFDWRDLGAVTPVKDQGSCGSCWSFSAAGALEGAHFLSTGELVSLSEQQLVDCDHECDPEQTGACDAGCNGGLMTTALEYILKVGGLEKEEDYPYTGSDRGICKFDKSKAVASVSNFSVVSMDEDQIAANLVKNGPLAVGINAVFMQTYIKGVSCPYICSKKLLDHGVLLVGYGSAGYAPIRFKDKAYWIIKNSWGEDWGENGFYKICRGKNICGVDSMVSTVAASTL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4431475 4432912 + Bma020857.1 Bma05g00147 82231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00147 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 328 347 IPR025661 -
Bma05g00147 368 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 364 - -
Bma05g00147 368 SMART pept_c1 138 364 IPR000668 GO:0006508|GO:0008234
Bma05g00147 368 Pfam Papain family cysteine protease 138 362 IPR000668 GO:0006508|GO:0008234
Bma05g00147 368 Gene3D Cysteine proteinases 30 364 - -
Bma05g00147 368 SMART Inhibitor_I29_2 55 111 IPR013201 -
Bma05g00147 368 SUPERFAMILY Cysteine proteinases 51 362 IPR038765 -
Bma05g00147 368 CDD Peptidase_C1A 139 363 IPR039417 -
Bma05g00147 368 Pfam Cathepsin propeptide inhibitor domain (I29) 55 111 IPR013201 -
Bma05g00147 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 304 314 IPR025660 -
Bma05g00147 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Bma05g00147 368 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Bma05g00147 368 PRINTS Papain cysteine protease (C1) family signature 328 334 IPR000668 GO:0006508|GO:0008234
Bma05g00147 368 PRINTS Papain cysteine protease (C1) family signature 306 316 IPR000668 GO:0006508|GO:0008234
Bma05g00147 368 PANTHER CYSTEINE PROTEASE RD19C-RELATED 27 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00147 K01373 CTSF; cathepsin F [EC:3.4.22.41] - zju:107420476 572.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00147 Bma-Chr5:4431475 Bma08g00786 Bma-Chr8:45244059 4.74E-127 dispersed
Bma01g00502 Bma-Chr1:4116768 Bma05g00147 Bma-Chr5:4431475 1.51E-25 transposed
Bma05g00432 Bma-Chr5:14191859 Bma05g00147 Bma-Chr5:4431475 0 transposed
Bma12g00545 Bma-Chr12:22320017 Bma05g00147 Bma-Chr5:4431475 0 transposed
Bma03g00565 Bma-Chr3:4686450 Bma05g00147 Bma-Chr5:4431475 5.22E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00147 Bma_Chr05 FPKM 3.224044 2.97988 11.848324 17.116283 1.525005 2.12589 1.405506 6.663042 7.597243 6.702833