Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00149 | ATGGCTAGTTTTTTCTATCTAGGCGGTAGAGACCAAGATCCACGAAACAAGGAAAGCGAAGGAGAAGAAGAAGATCAGAGGGCCCAAAACCTATATTTATACAGACAAGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAGTACAATCAGCAAAACACGAGCAACTATTTGTCTTTCGGAGTGGGTCCGAGCCGAAGAAACTTCATGAATGTCTCTGAGAACAATTCATCAAGATCAGGAGGAGGAGGAGGAGGGGTGAATTGCCATGACTGTGGAAATCAAGCCAAGAAAGACTGTTCTTATTTGAGGTGTAGAACTTGCTGCAAAAGCAGAGGGTTTCAATGTCAAACCCATGTCAGAAGCACGTGGGTTCCGGCGGCTAAACGCCGGGAGAGGCAGCAGCAACTTTCGGCCTTGCATTGTCAACCGCCGGAAGAGCCACCACAGCCTTGTGCAGGAGAGAATACGAAAAAGATGAGGGAGCTTCAGGTGGGAGGTTCTTCTTCTCTGGCCGCCTCTCGGTTAGAGCTGACGCAGTTTCCAGCTGAAGTGAATTCCCCAGCCGTGTTTCGCTGTGTAAAAGTCAGCCCAGTATATGACGCAGATGAACAGTTTGCATATCAGACGGCTGTAAACATCGGCGGACATGTTTTCAAAGGAATTCTTTATGACCAAGGCCCAGAAAGTCGTTACGCGGGCGGGGGTATTGAAAGCTCCTCCGTCCACGGCTCAGATGGAGCTCAGCAACTTAATCTTATTACAGGACCCTCCTGCACCATAGCCACTGCAACTACTAGTAATCCTTCTGCTACAATGCTAGACCCTTCTCTACATCCAGCTCCCCTTACTGCATTCATAGCTGGTACGCAATTCTTCCCACCTTCAAGGCCATGA | 900 | 48.67 | MASFFYLGGRDQDPRNKESEGEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNTSNYLSFGVGPSRRNFMNVSENNSSRSGGGGGGVNCHDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLSALHCQPPEEPPQPCAGENTKKMRELQVGGSSSLAASRLELTQFPAEVNSPAVFRCVKVSPVYDADEQFAYQTAVNIGGHVFKGILYDQGPESRYAGGGIESSSVHGSDGAQQLNLITGPSCTIATATTSNPSATMLDPSLHPAPLTAFIAGTQFFPPSRP | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4476375 | 4477729 | + | Bma020859.1 | Bma05g00149 | 82233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00149 | 299 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 296 | IPR007818 | GO:0003700|GO:0006355 | |
Bma05g00149 | 299 | Pfam | Domain of unknown function (DUF702) | 87 | 230 | - | - | |
Bma05g00149 | 299 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bma05g00149 | 299 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 90 | 131 | IPR006510 | - | |
Bma05g00149 | 299 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 296 | - | - | |
Bma05g00149 | 299 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Bma05g00149 | 299 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 181 | 229 | IPR006511 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g00224 | Bma05g00149 | CCT | |
Bma01g02345 | Bma05g00149 | CCT | |
Bma04g00224 | Bma05g00149 | ECH | |
Bma01g02345 | Bma05g00149 | ECH | |
Bma01g00741 | Bma05g00149 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00149 | Bma-Chr5:4476375 | Bma15g00973 | Bma-Chr15:37616023 | 1.94E-75 | dispersed | |
Bma01g02345 | Bma-Chr1:81040150 | Bma05g00149 | Bma-Chr5:4476375 | 5.89E-115 | wgd | |
Bma01g00741 | Bma-Chr1:6793248 | Bma05g00149 | Bma-Chr5:4476375 | 8.44E-169 | wgd | |
Bma04g00224 | Bma-Chr4:1914050 | Bma05g00149 | Bma-Chr5:4476375 | 5.66E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57299 | PF05142 | DUF702 | 4.30E-63 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00149 | - | - | jre:108991308 | 363.614 |