Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00149 ATGGCTAGTTTTTTCTATCTAGGCGGTAGAGACCAAGATCCACGAAACAAGGAAAGCGAAGGAGAAGAAGAAGATCAGAGGGCCCAAAACCTATATTTATACAGACAAGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAGTACAATCAGCAAAACACGAGCAACTATTTGTCTTTCGGAGTGGGTCCGAGCCGAAGAAACTTCATGAATGTCTCTGAGAACAATTCATCAAGATCAGGAGGAGGAGGAGGAGGGGTGAATTGCCATGACTGTGGAAATCAAGCCAAGAAAGACTGTTCTTATTTGAGGTGTAGAACTTGCTGCAAAAGCAGAGGGTTTCAATGTCAAACCCATGTCAGAAGCACGTGGGTTCCGGCGGCTAAACGCCGGGAGAGGCAGCAGCAACTTTCGGCCTTGCATTGTCAACCGCCGGAAGAGCCACCACAGCCTTGTGCAGGAGAGAATACGAAAAAGATGAGGGAGCTTCAGGTGGGAGGTTCTTCTTCTCTGGCCGCCTCTCGGTTAGAGCTGACGCAGTTTCCAGCTGAAGTGAATTCCCCAGCCGTGTTTCGCTGTGTAAAAGTCAGCCCAGTATATGACGCAGATGAACAGTTTGCATATCAGACGGCTGTAAACATCGGCGGACATGTTTTCAAAGGAATTCTTTATGACCAAGGCCCAGAAAGTCGTTACGCGGGCGGGGGTATTGAAAGCTCCTCCGTCCACGGCTCAGATGGAGCTCAGCAACTTAATCTTATTACAGGACCCTCCTGCACCATAGCCACTGCAACTACTAGTAATCCTTCTGCTACAATGCTAGACCCTTCTCTACATCCAGCTCCCCTTACTGCATTCATAGCTGGTACGCAATTCTTCCCACCTTCAAGGCCATGA 900 48.67 MASFFYLGGRDQDPRNKESEGEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNTSNYLSFGVGPSRRNFMNVSENNSSRSGGGGGGVNCHDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLSALHCQPPEEPPQPCAGENTKKMRELQVGGSSSLAASRLELTQFPAEVNSPAVFRCVKVSPVYDADEQFAYQTAVNIGGHVFKGILYDQGPESRYAGGGIESSSVHGSDGAQQLNLITGPSCTIATATTSNPSATMLDPSLHPAPLTAFIAGTQFFPPSRP 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4476375 4477729 + Bma020859.1 Bma05g00149 82233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00149 299 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 296 IPR007818 GO:0003700|GO:0006355
Bma05g00149 299 Pfam Domain of unknown function (DUF702) 87 230 - -
Bma05g00149 299 MobiDBLite consensus disorder prediction 1 27 - -
Bma05g00149 299 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 90 131 IPR006510 -
Bma05g00149 299 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 296 - -
Bma05g00149 299 MobiDBLite consensus disorder prediction 11 27 - -
Bma05g00149 299 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 181 229 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00224 Bma05g00149 CCT
Bma01g02345 Bma05g00149 CCT
Bma04g00224 Bma05g00149 ECH
Bma01g02345 Bma05g00149 ECH
Bma01g00741 Bma05g00149 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00149 Bma-Chr5:4476375 Bma15g00973 Bma-Chr15:37616023 1.94E-75 dispersed
Bma01g02345 Bma-Chr1:81040150 Bma05g00149 Bma-Chr5:4476375 5.89E-115 wgd
Bma01g00741 Bma-Chr1:6793248 Bma05g00149 Bma-Chr5:4476375 8.44E-169 wgd
Bma04g00224 Bma-Chr4:1914050 Bma05g00149 Bma-Chr5:4476375 5.66E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57299 PF05142 DUF702 4.30E-63 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00149 - - jre:108991308 363.614