Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00152 ATGAAGATCCGCTGCGACGTCTGCGACGTAGACGAAGCCTCTGTTTTCTGTGTCGCCGACGAAGCCGCCATTTGCGCTGCTTGCGACCACCGTGTCCACCATGCGAACAAGCTTGCTTCGAAGCACCGTCGGTTTTATCTTCTCCAACCATCCTCTGCGAAGGAATTCACTCTCTGCGATGTCTGCCAAGAGAAGAGAGCTTTTTTGTTCTGTCAGCAGGATAGAGCGATGCTTTGTAGAGACTGTGACGTTCCGATTCATGGGGCTAACGAGCTCACGAAAAAGCACGATCGGTTTCTTCTGACTGGGATTAAGCTTTCGGCGACGTCTGATTTATATACACCATCTAAACCAGCCTTAACCGATGGAAATCCTAGTTTTGGTTCTGATCTTAAACCAAAGCCTGTGGTTAAGAAACCTGTTTGTGTGTCTGTTTCTGCTTCGTCTGCAATGCTGAATCTGGAATCTGGCAGTAAAACTTCGTCAAATATACCACATGGCGTGCCTTTGAATGAGGGCGGTGAGGAAAATTGGATAGCTAATGAAGAGGGTGGCTCGTCCAGTAGCATCTCTGAGTATTTGATAGAGACGCTTCCTGGGTGGCACGTTGAAGATTTTCTGGACTCGTCTCCTGCTCCTTTTGGGTTTTGTAAGACTGATGAAACAACCCTTCCATTCATGGATCATGAACTCGAAAACAGTCCGAGTGTTTTCTGGGTTCCTCAGGCAGCATCTTCTCTGGGTCCTCCAGAAACTATGAGTGGGCTGAATATGTCGAATGAATCACTAGAATGGAACGTCAAAGTGAACAGAGGAGGGTCAGGGTGGATAGACGATGGTTTCACAGTCCCACAAATCAACCCTGCATCTTCTGGGTTCAGGAGATCCAGGCCATTTTGGTAG 903 47.95 MKIRCDVCDVDEASVFCVADEAAICAACDHRVHHANKLASKHRRFYLLQPSSAKEFTLCDVCQEKRAFLFCQQDRAMLCRDCDVPIHGANELTKKHDRFLLTGIKLSATSDLYTPSKPALTDGNPSFGSDLKPKPVVKKPVCVSVSASSAMLNLESGSKTSSNIPHGVPLNEGGEENWIANEEGGSSSSISEYLIETLPGWHVEDFLDSSPAPFGFCKTDETTLPFMDHELENSPSVFWVPQAASSLGPPETMSGLNMSNESLEWNVKVNRGGSGWIDDGFTVPQINPASSGFRRSRPFW 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4548087 4549208 + Bma020864.1 Bma05g00152 82236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00152 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma05g00152 300 SMART bboxneu5 54 101 IPR000315 GO:0008270
Bma05g00152 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma05g00152 300 Pfam B-box zinc finger 57 97 IPR000315 GO:0008270
Bma05g00152 300 Gene3D Classic Zinc Finger 1 97 - -
Bma05g00152 300 CDD Bbox1_BBX-like 5 47 - -
Bma05g00152 300 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Bma05g00152 300 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 298 - -
Bma05g00152 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
Bma05g00152 300 CDD Bbox1_BBX-like 58 101 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00739 Bma05g00152 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00152 Bma-Chr5:4548087 Bma13g00920 Bma-Chr13:39618056 1.97E-38 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma05g00152 Bma-Chr5:4548087 1.31E-59 transposed
Bma01g02354 Bma-Chr1:81170438 Bma05g00152 Bma-Chr5:4548087 2.60E-55 wgd
Bma01g00739 Bma-Chr1:6771919 Bma05g00152 Bma-Chr5:4548087 1.06E-133 wgd
Bma05g00152 Bma-Chr5:4548087 Bma06g00103 Bma-Chr6:1487047 3.02E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57300 PF00643 zf-B_box 6.50E-07 No_clan Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00152 - - tcc:18591484 325.094