Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00160 TCGCAGCTCAGCATGGAAATGGGTAGCACCTGCGATTCTAGTTTTTTCTCTTCGTTTGATCGGTCTTCATCTTCTGTTTCGCAAATTTATTTGGATTCAGCTGGTTCTGGAGCTTCTTCAATGTCGGTACCCGTGCGTCATCCGTTGTCGCCTAGTTTGAGTCCTGAGAATTGTAAGAGGCCTGGTATGCCTCCATCGTACCCTAGTAATCCATTTTCGCTCCCTAATTCACAGACCTCACCTTCCCAACCACTTTCTGGGCAAATGGGCTCTCAGAATTTCAGCTCAGGTCATTCCCATTCTAGGTCTTTATCTCAACCTTCATTTTTCTCGCTTGACTGTCTTCCACCATTGAGCCCATCCCCTTATCGCGAGTCCTCAACTTCTTTGCTTAGCGATCCTGTTTCCACTGAAGTTCCAATGGAAGATGATGTTATGCATTCTAATACTGCTTCTCTTCCTTCGCCTGCTTCAGGCGTCGGCAAGGCTCGTACTTCTGACGGGCTTCCTCCTCGCAGGGGTCATAGACGCTCTAATAGTGATATTCCATTAGGATTTATGCACTCCTCACCTCCATTGGTTCCATTTGGTGTTTCAGACCAGACTCTTTCAATTCAGGAAAATTGGGGACTAGACAAGCAGGTTCAGTTTATCAAGCAGGGTTCTTTTTGGGATAGAGCTGGAATTAGTAATTCAGATGGTATAACGAGTGGGAGGAAGTCTGACACCGAAATTACAGACGACTTATTAAATGCTTACTTGAATCTGGAGAACATTGATAAGATGAATTCATCTGATACTGAAGATAAGGATTTGTATAGCAAAGCCAGTGGCTCGAAGACAAATGGATGCGAAAGTAGTGATAATGAAGTGGAAAGTTGCGGCAATGGTTCATTTTCAAGGTCTGCCAATGGTAAGAGAGAAGGACTCAAGAGAAGTGCCAGTGGAGATGCAGCAGCACCTACCCGACACTATAGGAGCCTTTCCATGGATAGTTATATGGGAAGCTTGAATTTCGACAGTGAACCACATAATCTTAGCAATGCGAACAATGACCCGAATAAGTTCAGCGTGGAAATTGGTAGCAACGACTTCAGTGAAGCTGAGGTGAAGAAGATTATGGAAAGTGATAAACTTGCTGACCTTGCATCGTCAGACCCCAAACGCGTGAAGAGGTATTGTGTCATCTATTATTGGTGTCGACATAAAAAAATATTTTTCCTCATAGTTACCGATTTGCACAGGATTTTGGCTAATCGACAATCAGCTGCTCGCTCCAAAGAGAGGAAAATGCGATACATTGTGGAACTAGAGCACAAGGTGCAAACTTTGCAAACAGAAGCAACCACATTGTCTGCACAGGTTACAAGGTTGCAGAGAGACTCAGCAGGGCTATCTAACGAGAACAACGAGCTGAAATTTCGTGTTCAGGCCTTCGAGCAACAGGCCCAGCTCAAGGATGCCTTAAATGAAGCCTTGTCTGCTGAAGTTCAGCGCTTAAAAATTGTGGCTACAGAACTGGGTGGGGAGGCACACCTCTCGAATCGGATGGCTCAGCAGCTCTCTATCAACCAACAAAGCTTCCATGTGCCAAACCAACGCACTGCCCACATTAACCTCTATCAGCACAGTAATTTACTTCCCAAGAGGCAGAATGGCGAGGCTTCTAAGCCTGAGCCAAAGCCATGA 1689 45.29 SQLSMEMGSTCDSSFFSSFDRSSSSVSQIYLDSAGSGASSMSVPVRHPLSPSLSPENCKRPGMPPSYPSNPFSLPNSQTSPSQPLSGQMGSQNFSSGHSHSRSLSQPSFFSLDCLPPLSPSPYRESSTSLLSDPVSTEVPMEDDVMHSNTASLPSPASGVGKARTSDGLPPRRGHRRSNSDIPLGFMHSSPPLVPFGVSDQTLSIQENWGLDKQVQFIKQGSFWDRAGISNSDGITSGRKSDTEITDDLLNAYLNLENIDKMNSSDTEDKDLYSKASGSKTNGCESSDNEVESCGNGSFSRSANGKREGLKRSASGDAAAPTRHYRSLSMDSYMGSLNFDSEPHNLSNANNDPNKFSVEIGSNDFSEAEVKKIMESDKLADLASSDPKRVKRYCVIYYWCRHKKIFFLIVTDLHRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQVTRLQRDSAGLSNENNELKFRVQAFEQQAQLKDALNEALSAEVQRLKIVATELGGEAHLSNRMAQQLSINQQSFHVPNQRTAHINLYQHSNLLPKRQNGEASKPEPKP 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4667359 4669611 + Bma020875.1 Bma05g00160 82244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00160 562 Pfam bZIP transcription factor 415 469 IPR004827 GO:0003700|GO:0006355
Bma05g00160 562 MobiDBLite consensus disorder prediction 543 562 - -
Bma05g00160 562 MobiDBLite consensus disorder prediction 33 47 - -
Bma05g00160 562 Coils Coil 434 461 - -
Bma05g00160 562 MobiDBLite consensus disorder prediction 264 321 - -
Bma05g00160 562 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 415 472 IPR004827 GO:0003700|GO:0006355
Bma05g00160 562 SMART brlzneu 410 471 IPR004827 GO:0003700|GO:0006355
Bma05g00160 562 MobiDBLite consensus disorder prediction 276 303 - -
Bma05g00160 562 MobiDBLite consensus disorder prediction 33 102 - -
Bma05g00160 562 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 414 545 - -
Bma05g00160 562 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 75 393 - -
Bma05g00160 562 MobiDBLite consensus disorder prediction 146 186 - -
Bma05g00160 562 Gene3D - 413 463 - -
Bma05g00160 562 CDD bZIP_plant_RF2 415 463 IPR044759 GO:0003700|GO:0006355
Bma05g00160 562 MobiDBLite consensus disorder prediction 1 21 - -
Bma05g00160 562 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 414 545 - -
Bma05g00160 562 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 75 393 - -
Bma05g00160 562 SUPERFAMILY Leucine zipper domain 414 462 IPR046347 GO:0003700|GO:0006355
Bma05g00160 562 MobiDBLite consensus disorder prediction 72 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00160 - - - mnt:21402341 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00160 Bma-Chr5:4667359 Bma08g00776 Bma-Chr8:45085860 1.32E-104 dispersed
Bma03g00577 Bma-Chr3:4824891 Bma05g00160 Bma-Chr5:4667359 1.25E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1388 Cone20ag0093 . . . . Blo17g00749 . Bda08g01226 . . . . Bma05g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015918 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57301 PF00170 bZIP_1 6.10E-08 CL0018 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00160 Bma_Chr05 FPKM 11.740741 17.062399 13.128659 14.464897 18.077047 14.005443 14.08097 12.92707 16.423796 13.223757