Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00163 ATGGCTTTCCTGACTTTCTTGCCGGAACAATCTGACCCAGAAAAGAGAGAACAAGACGCCAAATCAAAGCGAAAGAGAAAGAAGCAGAAGCCGCCATCTTCATGGGAACAGTTCAAGAGTCTGCTCAGTTGCAAACAGATGGAAGCGAGCAAAGTGCACGACCCGTCGAAAAACACAGGACCCTACTCCAAGCTAGGCTCCTCCTGCAGCGCCATTTGCAGCTTCAAAGACGTGGCCCACGGCAACACTAGAGTCGTTCACAGAGCCGACAACTCTCCCAACTCTACCTCAGTGAGTCAGGAGGCCCGGTTGCTCAGTCGGAGAGGTGAAAATCGCCCGTCCGCTCAGTCCGGCAGAGGAATGCAACTGAGACGACTCTCCGGATACCCAGTTTCTCGAAATACAATATGTGCATGCCCACAATGCGGAGAGGTCTTCCCCAAGATTGAAAGTTTAGAGCTTCACCAAATACTTCGCCACGCTGTGTCGGAGCTGGGGCCGGAGGATGCGGGTCTCAATATCGTGGAGATAATCTTCAAGTCGAGTTGGATGAAGAAAGATAGCTCCGTCTGCAAGATCGAACGGATATTAAAAGTCCACAACATCCAGAAAACGATCCAACGGTTCGAGGAATGCCGAGACACGGTCAAAACCCGTGCGCTGAACAGCACTAGAAAAAACCCCAGGTGTGCGGCTGATGGAAATGAGCTGCTTCGGTTCCACTGTACCACTTTATCGTGCGCTCTCGGGACACGTGGCTCGACGAGCCTGTGCGGGTCCATTCCGGGTTGTGGGGTCTGCAGTATAATCAGGCATGGCTTTCAAGGAAAGGGCGAGATCAAGGGCGTCAGGACCATGGCTAGCAGCGGCCGGGCTCACGACGCTTTGCGTTGTGGGGAAGGTGGCAGGGCCATGCTCGTATGTCGTGTCATCGCCGGGAGGGTCAAGCGTATTGCGGATGACGCACCCGCCGAGGACGACAGCATGTCCTCTGGCTCTGGATCATACGACGCCATAGCAGGGTCCCCTGGCCCTGGGCTCTACTCCAATCTGGAAGATCTCATTGTTTTTAATCCAAGGGCTATCCTTCCCTGCTTTGTGGTGATTTACAAAGCCATGCAATCATAG 1128 53.72 MAFLTFLPEQSDPEKREQDAKSKRKRKKQKPPSSWEQFKSLLSCKQMEASKVHDPSKNTGPYSKLGSSCSAICSFKDVAHGNTRVVHRADNSPNSTSVSQEARLLSRRGENRPSAQSGRGMQLRRLSGYPVSRNTICACPQCGEVFPKIESLELHQILRHAVSELGPEDAGLNIVEIIFKSSWMKKDSSVCKIERILKVHNIQKTIQRFEECRDTVKTRALNSTRKNPRCAADGNELLRFHCTTLSCALGTRGSTSLCGSIPGCGVCSIIRHGFQGKGEIKGVRTMASSGRAHDALRCGEGGRAMLVCRVIAGRVKRIADDAPAEDDSMSSGSGSYDAIAGSPGPGLYSNLEDLIVFNPRAILPCFVVIYKAMQS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4707995 4709633 + Bma020878.1 Bma05g00163 82247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00163 375 Gene3D - 156 374 - -
Bma05g00163 375 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 24 374 - -
Bma05g00163 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 165 IPR013087 -
Bma05g00163 375 MobiDBLite consensus disorder prediction 1 39 - -
Bma05g00163 375 SUPERFAMILY ADP-ribosylation 162 372 - -
Bma05g00163 375 ProSitePatterns Zinc finger C2H2 type domain signature. 137 160 IPR013087 -
Bma05g00163 375 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 24 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00246 Bma05g00163 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00163 Bma-Chr5:4707995 Bma07g01569 Bma-Chr7:51067697 8.85E-69 dispersed
Bma04g00246 Bma-Chr4:2103621 Bma05g00163 Bma-Chr5:4707995 4.32E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57303 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00163 - - zju:107408289 545.814