Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00171 ATGGGTTTCTTGAGTACTGTACTTGGCTTCTGTGGATTTGGAGTAGGAACGTCGATTGGGATTGTTGTTGGTTATTACATGTTCATCTACTTCCAGCCAACTGATGTTAAAGATCCGGTGGTTCGCCCTTTGATTGAGCATGATTCGAAAACATTGCAACAATTGATGCCGGAAATACCTTTGTGGGTCAAAAACCCTGATTTTGATCGAGTTGACTGGCTAAACAAATTTATCGAGAATATGTGGCCTTACCTCGACAAGGCCATTTGCAAGATGGTGAGGAACATAGCAAAACCCATTATTGCTGAGCAAATTCCTAAATACAAAATTGATTCGGTCGAGTTTGAAACACTTACCTTGGGCTCCTTACCTCCCACTTTTCAAGGAGTGAAAGTTTATTCGACTGATGAAAAGGAACTAATTACCGAGCTATTAATGAAGTGGGCGGGAAACCCGAACATAACTATTGCCGTGAAAGCATTTGGATTGAAGGCCACCGTTCAGGTGGTTGATTTGCAAGTTTTTGCTGCTCCTCGGATAACGCTTAAGCCTTTGGTTCCCACATTTCCTTGTTTCGCCAAAATATTGGTCTCTCTAATGGAGAAGCCATATGTTGACTTTGGACTAAAATTACTCGGAGCTGATGTAATGTCGATTCCTGGCCTGTACAGGTTTGTCCAGGAGCTCATTAAAGATCAGGTTGCCAATATGTATCTGTGGCCTAAGACCCTGGAAGTGCCTATAATGGATCCTGCAAAGGCCATGAAAAAACCAGTTGGAATTCTTAATGTGAAGGTTTTGAAGGCAATGAAGCTGAAAAAGAAAGATCTTTTCGGGGCATCGGACCCGTATGTCAAGCTGAAGCTCACCGAGGACAAGCTTCCTGCAAAGAAAACGACCGTAAAACACAGTAATTTGAACCCAGAATGGAACGAGGAATTTCATTTGGTCATTAAGGATCCGGAATCTCAAGCCTTCGAACTGACCGTTTACGATTGGGAACAGGTCGGAAAACACGAGAAGATGGGTATGAATGTCGTTCCGTTGAAAGACCTTACTCCCGACGAGGCTAAAGTTTTAACTCTTGATCTGTTGAAAAACATGGATCCAAACGATCCTCAAAACGAGAAGTCGAGAGGGCAGATAGTCGTCGAATTATTGTACAAACCTTTTAAAGATGATGAAGTTTCAAAAGATGAGGACGATTCAGATACTGTCCAAAAGGCTCCTGAAGGAACACCAGCTGCTGGTGGCTTGCTTGTCATCATTATTCACGAAGCCGAAGACGTGGAAGGAAAGCACCACACCAACCCGTACGTACGCCTACTCTTCCGAGGAGAAGAAAGAAAAACAAAGTCCGTTAAGAAAAATCGGGATCCACGGTGGGACGAAGAATTTCAATTTACGCTCAACGAGCCGCCGACCAATGACAAAATTCACTTCGAAGTACTAAGTGCATCATCGAGGATCGGGCTGCTACATCCCAAGGAATCTTTGGGTTATGTCGATATAAATCTATCGGACGTGGTGACGAACAAAAGAATCAACGGGAAGTATCATCTGATCGATTCGAAGAACGGTCGGCTTCAAATCGAGCTCCAATGGAGAACAGCAGCA 1617 43.66 MGFLSTVLGFCGFGVGTSIGIVVGYYMFIYFQPTDVKDPVVRPLIEHDSKTLQQLMPEIPLWVKNPDFDRVDWLNKFIENMWPYLDKAICKMVRNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGVKVYSTDEKELITELLMKWAGNPNITIAVKAFGLKATVQVVDLQVFAAPRITLKPLVPTFPCFAKILVSLMEKPYVDFGLKLLGADVMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILNVKVLKAMKLKKKDLFGASDPYVKLKLTEDKLPAKKTTVKHSNLNPEWNEEFHLVIKDPESQAFELTVYDWEQVGKHEKMGMNVVPLKDLTPDEAKVLTLDLLKNMDPNDPQNEKSRGQIVVELLYKPFKDDEVSKDEDDSDTVQKAPEGTPAAGGLLVIIIHEAEDVEGKHHTNPYVRLLFRGEERKTKSVKKNRDPRWDEEFQFTLNEPPTNDKIHFEVLSASSRIGLLHPKESLGYVDINLSDVVTNKRINGKYHLIDSKNGRLQIELQWRTAA 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4832301 4836432 - Bma031170 Bma05g00171 82255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00171 539 Gene3D C2 domain 248 390 IPR035892 -
Bma05g00171 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Bma05g00171 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Bma05g00171 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Bma05g00171 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Bma05g00171 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Bma05g00171 539 SMART C2_3c 419 518 IPR000008 -
Bma05g00171 539 SMART C2_3c 261 361 IPR000008 -
Bma05g00171 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Bma05g00171 539 Pfam C2 domain 419 521 IPR000008 -
Bma05g00171 539 Pfam C2 domain 260 358 IPR000008 -
Bma05g00171 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Bma05g00171 539 Gene3D C2 domain 419 537 IPR035892 -
Bma05g00171 539 CDD C2 262 355 - -
Bma05g00171 539 CDD C2 420 521 - -
Bma05g00171 539 PRINTS C2 domain signature 304 317 IPR000008 -
Bma05g00171 539 PRINTS C2 domain signature 326 334 IPR000008 -
Bma05g00171 539 PRINTS C2 domain signature 277 289 IPR000008 -
Bma05g00171 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00171 - - - vvi:100260940 951.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00171 Bma-Chr5:4832301 Bma06g00980 Bma-Chr6:46360022 3.21E-65 dispersed
Bma08g00934 Bma-Chr8:48351688 Bma05g00171 Bma-Chr5:4832301 0 transposed
Bma15g00276 Bma-Chr15:2690860 Bma05g00171 Bma-Chr5:4832301 1.89E-07 transposed
Bma01g00720 Bma-Chr1:6581220 Bma05g00171 Bma-Chr5:4832301 1.22E-21 wgd
Bma03g00606 Bma-Chr3:4992019 Bma05g00171 Bma-Chr5:4832301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00171 Bma_Chr05 FPKM 14.3233 12.73649 32.553844 27.763704 10.153497 11.014698 10.166617 2.548376 2.076523 2.686171