Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00178 AGCTTGTTCATGGCGGAGGAGACGACCGAGGGTTTGGTTTATCTTCATGGGGACCTCCATTTGAAAATCATCGAGGCTCGGAGCTTGCCTAACATGGACTTGCTCTCTGAGCGTTTTCGTCGATTTTTTTCGACGTTCAACACGTGTGTTGCTCCATTTTCGAAAAGGAGTCAACACCATCGCCACCACAAAATCATCACCAGCGATCCTTACGTAACCGTCTGCCTTGCAGGAGCTACAGTTGCTCGAACTCGAGTGATTTCAAATTCACAGAATCCAATTTGGAATGAGAGCTTCATTATTCCTCTGGCTCATCCAGTCTCGCTGGTCGAGTTCCACGTGAAAGACAACGACGTGTTTGGTGCGGAGATGATCGGTACAGCCACAGTCTCTGTGCAGAGAATCATTTCTGGTAAACCCATAAATGACTGGTTTCCAATAATAAACGCATTCGGGAAACCACCGAAGCCAGATTCAGCTGTTCGTCTGGAAATGACATTCACCAAATGCAACGATAACCCAATCTACAGATACGGAATCGCAACCGATCCGCTTCATTTTGGGGTTCGTAATTGCTATTTTCCTGTGCGGCCAGGGGGTTCTGTGACGCTTTATCAGGACGCTCACATTCCGGATTCAGCTTTGGGGAAGATTGAATTGGATAGTAAGACTGAGTTTCAGCACGAGAATTGTTGGGAGGATATTTGCCATGCAATTTTGGAGGCTCATCATTTAGTCTACATTGTTGGTTGGTCGATTTATCATAAAGTGAAGCTCGTGAGAGAGCCTACGAAACCGTTGCCCAGCGGTGGGAATTTGAACTTGGGAGATTTGCTCAAGTACAAGTCCCAAGAAGGAGTGCGGGTTTTGTTGTTGGTTTGGGACGATAAGACTTCGCATAACAAATTTTTCATCAATACGGCTGGAGTAATGCAGACTCATGATGAAGAGACTCGGAAGTTTTTCAAACACTCCTCTGTCACATGTGTGCTGTCACCTCGATATGCCAGCATGGACTATGTGCTGAGTGTTTTATCACTTATATTTCAGGTCGTGGGAACCCTCTTTTCACATCACCAGAAATGTGTGATTGTAGATACACAAGCATCTGGAAATAATCGGAAAATAACTGCTTTCCTCGGAGGTCTTGATCTTTGTGATGGTCGCTATGATACTCCTGAACACAGACTATTTCGTGATCTTGATACTGTGTTTCAGAATGATTATCATAATCCGACATTGCCAGGACTTAAGCTTGTATGCTGCAAACTAACTAAAATCTACATAGACAGCATTAATATCAGACTGATTTTCGGTGCACCCAATGGTCCCAGGCAGCCTTGGCACGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATGTGCTTACAAATTTTGAGCAACGATGGAGAAAAGCCACAAAATGGTCAGAAATAGGACAGCGTTTCAAAAGGGTGTCTCACTGGCACGATGATGCTTTAATAAAGTTGGAACGTATTGTTTTCCGCTCGATTGACTCGGGATCCTTGAAAGGATTTCCTAAAGATGTTTATCAAGCTGAAATTAAGAATCTAGTCTGTGCAAAAAATTTGGTCATAGACAAGAGCATTCAAACTGCATACATCCAAGCAATAAGATCTGCTCAACGCTTCATATACATTGAAAACCAGTATTTCCTTGGATCATCATACGCATGGCCTTCTTACAAAAACGCAGGTGCCGATAATCTGATTCCCATGGAGTTGGCATTAAAGATTACCAGTAAGATTAAAGCCAATGAAAGATTCTCTGTTTATGTGGTAATACCAATGTGGCCCGAGGGTCTTCCATCATCCGCTGCTGTGCAAGAAATTCTCTATTGGCAGGGACAGACAATGCAAATGATGTATAGTATCATCGCACGACAACTTAAATCCATGAAGATGGAGAACTCACATCCACTAGAATACTTGAATTTTTACTGTCTTGGCAATAGAGAAGAAGTGCCCCAGGAGTTGTCAGGCTCAAGTAATGTCTCTTCAAAGAGTGGAGACCCGGCCTCAGATTCAGAGAGGTTTCGAAGGTTTATGATCTATGTACATGCCAAGGGAATGGTTGTTGATGATGAGTATGTCATCTTAGGGTCTGCCAATATAAATCAGCGATCAATGGCTGGCTCAAGAGACACGGAGATAGCCATGGGCGCATATCAACCTCATCACACATGGGGTAAGAAGCAGCGACATCCACATGGGCAGGTTTATGGGTACAGAATGTCCTTGTGGGCAGAACATACGGGGATGATTGATGATGACTTCAAGGAACCTGAAAGTTTGGCTTGTGTGAGGAGTGTAAACAAGATAGCTGAAGATAACTGGAGCAAGTACACTGCCAGGGAATTCATGCCATTACAGGGACACCTTCTCAAATACCCGCTGGATGTGGATGCGAATGGCAAAGTGCGGCCGCTTACCGGACAAGAATCCTTCCCCGATGTCGGTGGTAAGGTGCTCGGAACCCATACTACCCTCCCTGATGCTCTAACAACGTGA 2535 44.42 SLFMAEETTEGLVYLHGDLHLKIIEARSLPNMDLLSERFRRFFSTFNTCVAPFSKRSQHHRHHKIITSDPYVTVCLAGATVARTRVISNSQNPIWNESFIIPLAHPVSLVEFHVKDNDVFGAEMIGTATVSVQRIISGKPINDWFPIINAFGKPPKPDSAVRLEMTFTKCNDNPIYRYGIATDPLHFGVRNCYFPVRPGGSVTLYQDAHIPDSALGKIELDSKTEFQHENCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGNLNLGDLLKYKSQEGVRVLLLVWDDKTSHNKFFINTAGVMQTHDEETRKFFKHSSVTCVLSPRYASMDYVLSVLSLIFQVVGTLFSHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFQNDYHNPTLPGLKLVCCKLTKIYIDSINIRLIFGAPNGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEIGQRFKRVSHWHDDALIKLERIVFRSIDSGSLKGFPKDVYQAEIKNLVCAKNLVIDKSIQTAYIQAIRSAQRFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKITSKIKANERFSVYVVIPMWPEGLPSSAAVQEILYWQGQTMQMMYSIIARQLKSMKMENSHPLEYLNFYCLGNREEVPQELSGSSNVSSKSGDPASDSERFRRFMIYVHAKGMVVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKQRHPHGQVYGYRMSLWAEHTGMIDDDFKEPESLACVRSVNKIAEDNWSKYTAREFMPLQGHLLKYPLDVDANGKVRPLTGQESFPDVGGKVLGTHTTLPDALTT 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5051076 5055170 + Bma020903.2 Bma05g00178 82262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 502 843 IPR015679 -
Bma05g00178 844 CDD C2_plant_PLD 11 168 - -
Bma05g00178 844 SMART C2_3c 18 144 IPR000008 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 11 502 - -
Bma05g00178 844 SUPERFAMILY Phospholipase D/nuclease 227 480 - -
Bma05g00178 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 354 389 IPR001736 GO:0003824
Bma05g00178 844 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 11 502 IPR015679 -
Bma05g00178 844 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 170 IPR035892 -
Bma05g00178 844 Gene3D C2 domain 15 175 IPR035892 -
Bma05g00178 844 SMART pld_4 354 389 IPR001736 GO:0003824
Bma05g00178 844 SMART pld_4 690 717 IPR001736 GO:0003824
Bma05g00178 844 Gene3D Endonuclease Chain A 515 736 - -
Bma05g00178 844 SUPERFAMILY Phospholipase D/nuclease 535 775 - -
Bma05g00178 844 Pfam Phospholipase D C terminal 764 834 IPR024632 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 502 843 - -
Bma05g00178 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824
Bma05g00178 844 PIRSF PLD_plant 4 502 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma05g00178 844 PIRSF PLD_plant 501 844 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma05g00178 844 Gene3D Endonuclease Chain A 216 494 - -
Bma05g00178 844 Pfam Phospholipase D Active site motif 691 717 IPR001736 GO:0003824
Bma05g00178 844 Pfam Phospholipase D Active site motif 355 389 IPR001736 GO:0003824
Bma05g00178 844 Pfam C2 domain 17 147 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00178 Bma-Chr5:5051076 Bma05g00190 Bma-Chr5:5241623 0 dispersed
Bma05g00178 Bma-Chr5:5051076 Bma09g00903 Bma-Chr9:48415787 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00178 K01115 - mnt:21397448 1345.1