Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00178 AGCTTGTTCATGGCGGAGGAGACGACCGAGGGTTTGGTTTATCTTCATGGGGACCTCCATTTGAAAATCATCGAGGCTCGGAGCTTGCCTAACATGGACTTGCTCTCTGAGCGTTTTCGTCGATTTTTTTCGACGTTCAACACGTGTGTTGCTCCATTTTCGAAAAGGAGTCAACACCATCGCCACCACAAAATCATCACCAGCGATCCTTACGTAACCGTCTGCCTTGCAGGAGCTACAGTTGCTCGAACTCGAGTGATTTCAAATTCACAGAATCCAATTTGGAATGAGAGCTTCATTATTCCTCTGGCTCATCCAGTCTCGCTGGTCGAGTTCCACGTGAAAGACAACGACGTGTTTGGTGCGGAGATGATCGGTACAGCCACAGTCTCTGTGCAGAGAATCATTTCTGGTAAACCCATAAATGACTGGTTTCCAATAATAAACGCATTCGGGAAACCACCGAAGCCAGATTCAGCTGTTCGTCTGGAAATGACATTCACCAAATGCAACGATAACCCAATCTACAGATACGGAATCGCAACCGATCCGCTTCATTTTGGGGTTCGTAATTGCTATTTTCCTGTGCGGCCAGGGGGTTCTGTGACGCTTTATCAGGACGCTCACATTCCGGATTCAGCTTTGGGGAAGATTGAATTGGATAGTAAGACTGAGTTTCAGCACGAGAATTGTTGGGAGGATATTTGCCATGCAATTTTGGAGGCTCATCATTTAGTCTACATTGTTGGTTGGTCGATTTATCATAAAGTGAAGCTCGTGAGAGAGCCTACGAAACCGTTGCCCAGCGGTGGGAATTTGAACTTGGGAGATTTGCTCAAGTACAAGTCCCAAGAAGGAGTGCGGGTTTTGTTGTTGGTTTGGGACGATAAGACTTCGCATAACAAATTTTTCATCAATACGGCTGGAGTAATGCAGACTCATGATGAAGAGACTCGGAAGTTTTTCAAACACTCCTCTGTCACATGTGTGCTGTCACCTCGATATGCCAGCATGGACTATGTGCTGAGTGTTTTATCACTTATATTTCAGGTCGTGGGAACCCTCTTTTCACATCACCAGAAATGTGTGATTGTAGATACACAAGCATCTGGAAATAATCGGAAAATAACTGCTTTCCTCGGAGGTCTTGATCTTTGTGATGGTCGCTATGATACTCCTGAACACAGACTATTTCGTGATCTTGATACTGTGTTTCAGAATGATTATCATAATCCGACATTGCCAGGACTTAAGCTTGTATGCTGCAAACTAACTAAAATCTACATAGACAGCATTAATATCAGACTGATTTTCGGTGCACCCAATGGTCCCAGGCAGCCTTGGCACGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATGTGCTTACAAATTTTGAGCAACGATGGAGAAAAGCCACAAAATGGTCAGAAATAGGACAGCGTTTCAAAAGGGTGTCTCACTGGCACGATGATGCTTTAATAAAGTTGGAACGTATTGTTTTCCGCTCGATTGACTCGGGATCCTTGAAAGGATTTCCTAAAGATGTTTATCAAGCTGAAATTAAGAATCTAGTCTGTGCAAAAAATTTGGTCATAGACAAGAGCATTCAAACTGCATACATCCAAGCAATAAGATCTGCTCAACGCTTCATATACATTGAAAACCAGTATTTCCTTGGATCATCATACGCATGGCCTTCTTACAAAAACGCAGGTGCCGATAATCTGATTCCCATGGAGTTGGCATTAAAGATTACCAGTAAGATTAAAGCCAATGAAAGATTCTCTGTTTATGTGGTAATACCAATGTGGCCCGAGGGTCTTCCATCATCCGCTGCTGTGCAAGAAATTCTCTATTGGCAGGGACAGACAATGCAAATGATGTATAGTATCATCGCACGACAACTTAAATCCATGAAGATGGAGAACTCACATCCACTAGAATACTTGAATTTTTACTGTCTTGGCAATAGAGAAGAAGTGCCCCAGGAGTTGTCAGGCTCAAGTAATGTCTCTTCAAAGAGTGGAGACCCGGCCTCAGATTCAGAGAGGTTTCGAAGGTTTATGATCTATGTACATGCCAAGGGAATGGTTGTTGATGATGAGTATGTCATCTTAGGGTCTGCCAATATAAATCAGCGATCAATGGCTGGCTCAAGAGACACGGAGATAGCCATGGGCGCATATCAACCTCATCACACATGGGGTAAGAAGCAGCGACATCCACATGGGCAGGTTTATGGGTACAGAATGTCCTTGTGGGCAGAACATACGGGGATGATTGATGATGACTTCAAGGAACCTGAAAGTTTGGCTTGTGTGAGGAGTGTAAACAAGATAGCTGAAGATAACTGGAGCAAGTACACTGCCAGGGAATTCATGCCATTACAGGGACACCTTCTCAAATACCCGCTGGATGTGGATGCGAATGGCAAAGTGCGGCCGCTTACCGGACAAGAATCCTTCCCCGATGTCGGTGGTAAGGTGCTCGGAACCCATACTACCCTCCCTGATGCTCTAACAACGTGA 2535 44.42 SLFMAEETTEGLVYLHGDLHLKIIEARSLPNMDLLSERFRRFFSTFNTCVAPFSKRSQHHRHHKIITSDPYVTVCLAGATVARTRVISNSQNPIWNESFIIPLAHPVSLVEFHVKDNDVFGAEMIGTATVSVQRIISGKPINDWFPIINAFGKPPKPDSAVRLEMTFTKCNDNPIYRYGIATDPLHFGVRNCYFPVRPGGSVTLYQDAHIPDSALGKIELDSKTEFQHENCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGNLNLGDLLKYKSQEGVRVLLLVWDDKTSHNKFFINTAGVMQTHDEETRKFFKHSSVTCVLSPRYASMDYVLSVLSLIFQVVGTLFSHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFQNDYHNPTLPGLKLVCCKLTKIYIDSINIRLIFGAPNGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEIGQRFKRVSHWHDDALIKLERIVFRSIDSGSLKGFPKDVYQAEIKNLVCAKNLVIDKSIQTAYIQAIRSAQRFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKITSKIKANERFSVYVVIPMWPEGLPSSAAVQEILYWQGQTMQMMYSIIARQLKSMKMENSHPLEYLNFYCLGNREEVPQELSGSSNVSSKSGDPASDSERFRRFMIYVHAKGMVVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKQRHPHGQVYGYRMSLWAEHTGMIDDDFKEPESLACVRSVNKIAEDNWSKYTAREFMPLQGHLLKYPLDVDANGKVRPLTGQESFPDVGGKVLGTHTTLPDALTT 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5051076 5055170 + Bma020903.2 Bma05g00178 82262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 502 843 IPR015679 -
Bma05g00178 844 CDD C2_plant_PLD 11 168 - -
Bma05g00178 844 SMART C2_3c 18 144 IPR000008 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 11 502 - -
Bma05g00178 844 SUPERFAMILY Phospholipase D/nuclease 227 480 - -
Bma05g00178 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 354 389 IPR001736 GO:0003824
Bma05g00178 844 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 11 502 IPR015679 -
Bma05g00178 844 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 170 IPR035892 -
Bma05g00178 844 Gene3D C2 domain 15 175 IPR035892 -
Bma05g00178 844 SMART pld_4 354 389 IPR001736 GO:0003824
Bma05g00178 844 SMART pld_4 690 717 IPR001736 GO:0003824
Bma05g00178 844 Gene3D Endonuclease Chain A 515 736 - -
Bma05g00178 844 SUPERFAMILY Phospholipase D/nuclease 535 775 - -
Bma05g00178 844 Pfam Phospholipase D C terminal 764 834 IPR024632 -
Bma05g00178 844 PANTHER PHOSPHOLIPASE D 502 843 - -
Bma05g00178 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824
Bma05g00178 844 PIRSF PLD_plant 4 502 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma05g00178 844 PIRSF PLD_plant 501 844 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma05g00178 844 Gene3D Endonuclease Chain A 216 494 - -
Bma05g00178 844 Pfam Phospholipase D Active site motif 691 717 IPR001736 GO:0003824
Bma05g00178 844 Pfam Phospholipase D Active site motif 355 389 IPR001736 GO:0003824
Bma05g00178 844 Pfam C2 domain 17 147 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00178 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - mnt:21397448 1345.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00178 Bma-Chr5:5051076 Bma05g00190 Bma-Chr5:5241623 0 dispersed
Bma05g00178 Bma-Chr5:5051076 Bma09g00903 Bma-Chr9:48415787 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001558 0 7 3 2 2 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 3 2 2 2 4 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00178 Bma_Chr05 FPKM 4.718667 3.598227 7.325036 6.541666 17.583014 18.957954 16.338854 0.0 0.080689 0.0