Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00180 ATGAGCGCGTCTAGGTTTATAAAGTGCGTCACGGTCGGTGATGGGGCCGTCGGAAAGACTTGCATGTTGATTTCGTACACCAGTAACACTTTTCCCACGGATTATGTGCCTACAGTTTTTGACAATTTCAGCGCCAATGTGGTTGTGGACGGAAGCACTGTCAACCTAGGATTATGGGACACTGCTGGTCAGGAAGATTACAATAGACTAAGGCCGTTGAGCTATCGAGGGGCTGATGTTTTTATACTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAACGTTGCCAAGAAGTGGATTCCTGAACTGAGACATTATGCACCTGGAGTTCCAATAATTCTCGTTGGAACGAAACTCGATCTTCGGGATGACAAACAGTTTTTCGCAGACCATCCTGGTGCAGTTTCCATCTCTACCGCTCAGGGGGAGGAATTAAGAAAAGTAATTGGAGCTCCTTCCTACATCGAGTGTAGTTCCAAAACTCAGCAGTGCCCTATTCTCTCCTTTGCAAAAGCCTTTACACAATCTTGTGGTTTGCAGAATGTGAAGGCAGTTTTCGACGCAGCCATTAAGGTGGTGCTCCAGCCCCCAAAACAGAAGAAAAAGAAAGCACACGGCGTTTGCTCTATACTATGA 639 46.17 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFADHPGAVSISTAQGEELRKVIGAPSYIECSSKTQQCPILSFAKAFTQSCGLQNVKAVFDAAIKVVLQPPKQKKKKAHGVCSIL 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5108450 5110103 + Bma020906.1 Bma05g00180 82264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00180 212 Pfam Ras family 8 165 IPR001806 GO:0003924|GO:0005525
Bma05g00180 212 ProSiteProfiles small GTPase Ras family profile. 2 212 IPR001806 GO:0003924|GO:0005525
Bma05g00180 212 CDD Rop_like 6 195 - -
Bma05g00180 212 Gene3D - 5 209 IPR027417 -
Bma05g00180 212 ProSiteProfiles small GTPase Rho family profile. 1 194 - -
Bma05g00180 212 ProSiteProfiles small GTPase Rab1 family profile. 2 212 - -
Bma05g00180 212 SMART ran_sub_2 12 212 - -
Bma05g00180 212 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 212 - -
Bma05g00180 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 164 IPR027417 -
Bma05g00180 212 SMART rho_sub_3 9 197 IPR001806 GO:0003924|GO:0005525
Bma05g00180 212 PANTHER RHO FAMILY GTPASE 1 212 IPR003578 GO:0005525|GO:0007264
Bma05g00180 212 SMART rab_sub_5 7 197 - -
Bma05g00180 212 PRINTS Transforming protein P21 ras signature 7 28 - -
Bma05g00180 212 PRINTS Transforming protein P21 ras signature 109 122 - -
Bma05g00180 212 PRINTS Transforming protein P21 ras signature 47 69 - -
Bma05g00180 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Bma05g00180 212 PRINTS Transforming protein P21 ras signature 30 46 - -
Bma05g00180 212 TIGRFAM small_GTP: small GTP-binding protein domain 7 158 IPR005225 GO:0005525
Bma05g00180 212 SMART ras_sub_4 4 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00180 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - twl:120011554 360.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02379 Bma05g00180 CCT
Bma01g02379 Bma05g00180 ECH
Bma01g00719 Bma05g00180 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00719 Bma-Chr1:6577026 Bma05g00180 Bma-Chr5:5108450 2.72E-127 dispersed
Bma05g00180 Bma-Chr5:5108450 Bma05g00366 Bma-Chr5:11342009 7.82E-124 dispersed
Bma05g00172 Bma-Chr5:4867789 Bma05g00180 Bma-Chr5:5108450 5.95E-142 proximal
Bma01g02379 Bma-Chr1:81411545 Bma05g00180 Bma-Chr5:5108450 3.78E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00180 Bma_Chr05 FPKM 26.939013 29.289589 35.28735 34.255295 31.333694 29.724136 30.872429 22.014357 21.06444 20.953777