Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00183 ATGGCAGACTGTGCCCATTCTTCCTCTAATAATCATTCCTCTGGTGTTGCGGCGGTTTCTGGCGAAAATAGCAACAACCCGCAATCTCGGCGGGGTTCTTTGCCTTCGTCGTGGGCGGAAGTTGTTCGAGGGGAACAAGAGCCAACATGGGTCGTTCGCCATTCGCCTCCATCGTCTGCGTCGTCGCTTTCTTCGCTGGCAATGTCTATGCAGGAGCAAACTCCTTTTGTCGATTGCTCTGCTACCCAAGTGGCACAGTCTCCGTTGCCTCTGCCACCGGAGAATTCTGCTTCCGCTGAGAACTCTGATGAGAATCACGTCAATACAGCCGCTTGGAACATGAAGCCTGCTTGGAACAAGCCCTCCGACGGCGTCGTTGAAGTTGGTCCTGCAAAGGGAGCCGTTGCTTTGCCAGCATTATCTGAGTCTGCTGAGGCTTCACCTAAATTTCAAGATGAATCTTCCTGGTGGGATGCTGCTGATGCATCAATTTCTACTCAGGTACCTGTTAATCTGCTCCATCCTCATAACCACGTTGCTAGTAACGCAACACCCAATTCTACAACAAACCATGCAAGGCCGATTCAGCAAAGATTCAATCTGTATGCCAAGGGAGCCGTTGCTTCGCCAGCATTATCTGAGTCTGCTGAGGCTTCACCTAAATTTCAAGATGAATCTTCCTGGTGGGATGCTGCTGATGCTGATGCTGATGCATCAATTTCTACTCAGGTACCTGTTAATCTTCTCCATCCTCATAACCACGTTGCTAGTAACGCAACACCCAATTCTACAACAAACCATGCAAGGCCGATTCAGCAAAGATTCAATCTGTATGCCATCCACAGTGGCAATGGAGGGGGGCCTCCTCATGGTGGGTTTATTAGTCCCTCCCAATCTCCGGCTCCATCTTCTTTGATATTCCAACTGCCTCATAATAGTTATGGTAATCTAGTGCCACAAGCCTCGAGCACTTCTCTTCGAGAGCCTTCTTACCCGAATAATAATTGGAATCCAAGACCTATTGGAGGATATTTACCCCAGCCCCATCCAGTCAACGACCACCATGGTATGTCACTGAGAGGAAACATCTACCCCAACATGCATAGAAATAGTGTCCGCCAAAATAACGAGAATTGGGGGAATCATTATCGTGGAAGTTCTTTCAATGGTAGAAACGTTCATATGCATCAGCAAAGACCTCATCCGAGAAGTTCAAATGTTCATATGCATCAGCAAAGACCTCATACGAGAAGTTCAAACGTTCATATGCATCAGCAAAGACCTCATCCGAGAAGTTCTTGGGGGCCTTCAACTTCATCACCTTATATGCCTCCCACTCACTTTTTCTCCCCACAACCAGTGAGAGCCTATGGAAATCACATGTTTCACGGAGTACCTTTTGATGCATTTCCCCGGGAGCATTATAGAGGTCAACAATTTATGCCACAGCATCCAATTACTCAATCTATTTCTGAGCCTCTTGTGTCCACCTTGTTGGTCAATCAGATAAACTATTATTTCTGTGATGCTAATTTGGTAGATGACAATTTTTTGAAGAAGCACATGGATGATCAAGGATGGGTTTCCATTCATTTAGTAGCAGGCTTTCCAAGAGTGAAGAAGTTGACAAATGATATCCAGTTAATCCTAGATTCTTTGAGAGCTTCTACGGTTGTTGAAGTACAGGGTGATAAAATACGAAGGCGACATGAGTGGATCAACTGGATCCCAAACAAGAACCCGACGCCTAATCACTCGTTGTCATCTTCTGAATCAAGTCAAGATCTGCTAACAAGTGTCCAGAATTTGAACATAGAGCATGTAGTTGGCGACCGTACTAGCACAAACGGCCACGAAGACTCGATATTTAGAGACGATACTGGAAAAATGAAAGAACTACCAAATAGCGAAAATACTCGGAATGCTAATTCTGGAAAATGA 1941 45.7 MADCAHSSSNNHSSGVAAVSGENSNNPQSRRGSLPSSWAEVVRGEQEPTWVVRHSPPSSASSLSSLAMSMQEQTPFVDCSATQVAQSPLPLPPENSASAENSDENHVNTAAWNMKPAWNKPSDGVVEVGPAKGAVALPALSESAEASPKFQDESSWWDAADASISTQVPVNLLHPHNHVASNATPNSTTNHARPIQQRFNLYAKGAVASPALSESAEASPKFQDESSWWDAADADADASISTQVPVNLLHPHNHVASNATPNSTTNHARPIQQRFNLYAIHSGNGGGPPHGGFISPSQSPAPSSLIFQLPHNSYGNLVPQASSTSLREPSYPNNNWNPRPIGGYLPQPHPVNDHHGMSLRGNIYPNMHRNSVRQNNENWGNHYRGSSFNGRNVHMHQQRPHPRSSNVHMHQQRPHTRSSNVHMHQQRPHPRSSWGPSTSSPYMPPTHFFSPQPVRAYGNHMFHGVPFDAFPREHYRGQQFMPQHPITQSISEPLVSTLLVNQINYYFCDANLVDDNFLKKHMDDQGWVSIHLVAGFPRVKKLTNDIQLILDSLRASTVVEVQGDKIRRRHEWINWIPNKNPTPNHSLSSSESSQDLLTSVQNLNIEHVVGDRTSTNGHEDSIFRDDTGKMKELPNSENTRNANSGK 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5137688 5140783 - Bma020909.1 Bma05g00183 82267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00183 646 MobiDBLite consensus disorder prediction 609 646 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 1 35 - -
Bma05g00183 646 SUPERFAMILY Winged helix DNA-binding domain 492 578 IPR036390 -
Bma05g00183 646 PANTHER LA-RELATED PROTEIN 1B 205 614 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 1 79 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 612 633 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 52 79 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 396 424 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 390 439 - -
Bma05g00183 646 MobiDBLite consensus disorder prediction 425 439 - -
Bma05g00183 646 Pfam La domain 499 554 IPR006630 -
Bma05g00183 646 SMART la 493 569 IPR006630 -
Bma05g00183 646 CDD LAM 499 568 - -
Bma05g00183 646 Gene3D - 495 575 IPR036388 -
Bma05g00183 646 PANTHER LUPUS LA PROTEIN-RELATED 205 614 IPR045180 -
Bma05g00183 646 ProSiteProfiles La-type HTH domain profile. 489 578 IPR006630 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00183 K18757 LARP1; la-related protein 1 - tcc:18591599 254.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00255 Bma05g00183 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00183 Bma-Chr5:5137688 Bma09g00179 Bma-Chr9:6640214 1.06E-38 dispersed
Bma07g00299 Bma-Chr7:3702065 Bma05g00183 Bma-Chr5:5137688 6.63E-22 transposed
Bma04g00255 Bma-Chr4:2160032 Bma05g00183 Bma-Chr5:5137688 9.91E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00183 Bma_Chr05 FPKM 0.309234 0.26856 1.044818 0.975936 7.507349 7.649165 7.882777 0.0 0.0 0.0