Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00197 GCTGCGGTTTGTCGGAAACCAGGAGAAGCACTGGTGATAGAGGAGATAACAGTGGCGCCTCCGATGCCTCGCGAGGTTCGGATTCGGATCATCTGCACCTCTTTATGTCACAGCGACGTCACATTCTGGAAAATGAAGGTTCCTCCCGCCATTTACCCTAGAATTCTCGGCCACGAGGCTATTGGGGTGGTGGAGAGTGTAGGAGATGATGTTAATGAGATTACGGTAGGGGATACTGTTATCCCAACGTTCTTGTCGGACTGTGGACAATGTGTAGATTGCACATCAAAGAAGAGCAATCTCTGTTCCAAACTTCCTTTTAAGCTCTCACCTTGGATGCATAGATATGAAACAAGTAGATTCACGGATCTCAATGGAGAGGTTTTGTATCATTTTATGTTTGTATCAAGTTTCAGCGAATATACGGTGGTGGATATAGCCCACGTCACAAAAATTGACCCTCAAATTCCTCCAAACAAGGCATGCCTCCTTAGTTGTGGGGTATCTACTGGGGTTGGTGCTGCATGGAAAACAGCTGATGTGGAGGCAGGATCGACAGTAGCCATATTTGGACTCGGGTCCATAGGCTTGGCTGTCGCTGAAGGAGCAAGATTATGCAAAGCAAGTAGAATTATTGGGGTAGATATCATCCCAGAAAAATATGAAATTGGAAAAACTTTTGGTGTCACAGACTTTGTTGATGTTGGACTTTGCAAGAATAAATCTGTCAGCCAGATGATAAATGAGATAACTGGTGGGGGAGCAGACTATTGTTTTGAATGTGTTGGATTGGCATCCTTGGTCCAGGAAGCCTATGCTTGCTGCAGAAAGGGGTGGGGAAAAACAATTGTGGTGGGAGTAGACCAGCCGGGTTCACTGTTGAGCCTGAGCTCATATGACGTCCTTCATAATGGAAAAATCCTCATGGGCTCCTTATTTGGTGGACTGAAGCCTAAGTCAGATATTCCTATTCTTCTCAAATATTACTTAGACAAGGAACTACAACTGGATGAATTTGTGACACATGAACTAAGGTTTGAAGACATCAACGAAGCTTTTAATCTTCTAGTTGAAGGAAAATGCCTCCGCTGCGTAATTTGGATGGATAACCAAAGCTGA 1119 44.5 AAVCRKPGEALVIEEITVAPPMPREVRIRIICTSLCHSDVTFWKMKVPPAIYPRILGHEAIGVVESVGDDVNEITVGDTVIPTFLSDCGQCVDCTSKKSNLCSKLPFKLSPWMHRYETSRFTDLNGEVLYHFMFVSSFSEYTVVDIAHVTKIDPQIPPNKACLLSCGVSTGVGAAWKTADVEAGSTVAIFGLGSIGLAVAEGARLCKASRIIGVDIIPEKYEIGKTFGVTDFVDVGLCKNKSVSQMINEITGGGADYCFECVGLASLVQEAYACCRKGWGKTIVVGVDQPGSLLSLSSYDVLHNGKILMGSLFGGLKPKSDIPILLKYYLDKELQLDEFVTHELRFEDINEAFNLLVEGKCLRCVIWMDNQS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5452839 5455098 + Bma020930.1 Bma05g00197 82281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00197 372 PANTHER ALCOHOL DEHYDROGENASE 1 367 - -
Bma05g00197 372 Gene3D - 171 311 - -
Bma05g00197 372 SUPERFAMILY GroES-like 319 367 IPR011032 -
Bma05g00197 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 331 IPR036291 -
Bma05g00197 372 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 1 367 - -
Bma05g00197 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 57 71 IPR002328 GO:0008270|GO:0016491
Bma05g00197 372 SUPERFAMILY GroES-like 1 182 IPR011032 -
Bma05g00197 372 Pfam Zinc-binding dehydrogenase 195 318 IPR013149 -
Bma05g00197 372 Pfam Alcohol dehydrogenase GroES-like domain 24 151 IPR013154 -
Bma05g00197 372 Gene3D - 2 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00197 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - qsu:112018306 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00197 Bma-Chr5:5452839 Bma07g01033 Bma-Chr7:41786114 7.94E-115 dispersed
Bma05g00197 Bma-Chr5:5452839 Bma03g01194 Bma-Chr3:17950504 4.50E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00197 Bma_Chr05 FPKM 0.885135 0.957991 1.561008 0.986638 1.285021 0.0 0.0 1.07578 0.943825 0.829064