Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00240 ATGGCCAACAAGCTTTCAGATGAATTAACCCAGAAAACTGGCATGTTTGGTCTCATGGTCTGGGAAGTAATCGGAATTGCTGTCGGGTTGTTCATTGTAGTCATCCTATCTGTACTCTCATTATGTCTTACGTCGAGAAAGAAGTCAAGGAGAGCTAGGGACAAAGTAACGCTTTGTCAAATCCCTGCTGTTTCCAAGGAGATCAAAGAGGTTAGAGTGGAGCAATTATCAGCAGATGAATTTGTTCCACGCGATGGAATTCTTCTCACCATTCATGACAAATCAAATGAAAAAGGTTCAGACAAGGTTTTGGTCCACGTTGATGTGGGGAAGATGAAGAACGGAGACAGTGGCAGTCAGTCAGGTTCGTTTCATCAGTTCGATAAAGATGGTGCTGGATCTCAATCTGGAGAAGAAGGAAATTCTGGCAAGGTCACCATATACAGACCCTCTTCTTCTTGTTCTTCCTATCCGATTACTGCTCCTTCCCCTCTTTCCGGCCTGCCCGAATTTTCTCACTTGGGTTGGGGTCACTGGTTTACTCTGAGAGATCTTGAGGTTGCTACAAACCGATTCTCCAAAGAAAATGTCCTCGGGGAGGGCGGTTATGGGGTTGTTTATCAGGGGCGTCTAATCAATGGAACTGCAGTGGCTGTGAAAAGGATTCTCAATAATCTGGGTCAGGCGGAGAAAGAATTTCGAGTTGAAGTAGAAGCCATTGGTCATGTGCGCCATAAGAATTTGGTTCGTCTTCTGGGTTATTGCATTGAAGGAACTCACAGGATGCTGGTTTATGAGTATGTCAACAATGGAAACTTAGAGCAATGGCTTCACGGAGCTATGCGTCAGCATGGGTACCTTACTTGGGAGGCACGGATGAAAATTCTACTTGGTACAGCAAAAGCGCTTGCATATTTGCATGAGGCTATTGAGCCTAAAGTGGTGCATCGTGACATTAAGTCGAGCAACATATTGATTGACGACGACTTCAATTCGAAGGTATCTGACTTCGGCCTGGCCAAGTTGCTGGGTGCTGGTAAAAGTCATGTTACAACTCGAGTGATGGGAACCTTCGGATACGTAGCTCCTGAATATGCAAATACTGGTCTTTTGAATGAGAAGAGCGATGTCTATAGCTTTGGGGTTTTGCTTCTCGAAACAATTACCGGAAGAGATCCTGTAGATTATGGACGCCCTTCCCAGGAGGTAAATCTAGTAGATTGGTTGAAAATGATGGTTGGAAGCAGACGATCGGAAGAAGTTGTTGATCCAAACATGGAGGTAAGGCCATCCACAAGAGCTCTAAAACGAGCACTTTTGACCGCTTTGAGGTGTGTCGACCCTGATTCTGAAAAGAGACCAAAGATGGGTCAAATCGTGCGCATGCTCGAGTCGGAAGAGTATCCACTACCTCGAGAGGATCGAAGGCAGAGAAGAACTCAGGCGAGCAGCACCGACATTGAATCGCAGAGGGAGTATTCCGATACAGACCGGAGCGAAAATCCGGCATCGCGATCGGAAAGCAGGCGGGACCAGCATATGTAA 1545 46.15 MANKLSDELTQKTGMFGLMVWEVIGIAVGLFIVVILSVLSLCLTSRKKSRRARDKVTLCQIPAVSKEIKEVRVEQLSADEFVPRDGILLTIHDKSNEKGSDKVLVHVDVGKMKNGDSGSQSGSFHQFDKDGAGSQSGEEGNSGKVTIYRPSSSCSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLEVATNRFSKENVLGEGGYGVVYQGRLINGTAVAVKRILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNSKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLETITGRDPVDYGRPSQEVNLVDWLKMMVGSRRSEEVVDPNMEVRPSTRALKRALLTALRCVDPDSEKRPKMGQIVRMLESEEYPLPREDRRQRRTQASSTDIESQREYSDTDRSENPASRSESRRDQHM 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6529823 6532617 - Bma020992.1 Bma05g00240 82324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00240 514 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 512 - -
Bma05g00240 514 MobiDBLite consensus disorder prediction 490 514 - -
Bma05g00240 514 SUPERFAMILY Protein kinase-like (PK-like) 176 476 IPR011009 -
Bma05g00240 514 MobiDBLite consensus disorder prediction 114 147 - -
Bma05g00240 514 CDD STKc_IRAK 198 464 - -
Bma05g00240 514 PANTHER OS01G0323000 PROTEIN 2 512 - -
Bma05g00240 514 MobiDBLite consensus disorder prediction 464 514 - -
Bma05g00240 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Bma05g00240 514 MobiDBLite consensus disorder prediction 464 482 - -
Bma05g00240 514 ProSiteProfiles Protein kinase domain profile. 192 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00240 514 Gene3D Transferase(Phosphotransferase) domain 1 268 480 - -
Bma05g00240 514 Pfam Protein kinase domain 193 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00240 514 ProSitePatterns Protein kinases ATP-binding region signature. 198 220 IPR017441 GO:0005524
Bma05g00240 514 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Bma05g00240 514 SMART serkin_6 192 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00606 Bma-Chr1:5491285 Bma05g00240 Bma-Chr5:6529823 0 dispersed
Bma03g01344 Bma-Chr3:28445738 Bma05g00240 Bma-Chr5:6529823 0 dispersed
Bma05g00240 Bma-Chr5:6529823 Bma11g00819 Bma-Chr11:25499778 3.98E-174 dispersed
Bma05g00240 Bma-Chr5:6529823 Bma15g00184 Bma-Chr15:1925429 3.37E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66490 PF00069 Pkinase 2.90E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00240 - - jre:109008584 885.945