Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00253 AACTCCCTTTTTGAAGATTTGTCTGAGGATTTTCGCTTGCCGATCAGCCACAAGCCGACCGAAAATGTTGATTTGGATCAAGTGGAGCAGGCATCATTGGATAAGCAATTGACTTCCTCCAACATTGGGTTTCGACTTCTACAGAAAATGGGCTGGAAAGGAAAAGGTCTTGGAAAAGATGAGCAAGGAATAATTGAGCCAATAAAATCTGGGATTAGAGATCCAAAACTAGGAGTTGGGAAACAGGAAGAGGATGATTTTTTTACTGCAGAAGAAAATATAAGACGTAAAAAACTTGATGTTGAGCTTGAAGAGACCGAGGAACATGTAAAGAAGCGGGAGGTCTTGGCGGAACGTGAGCAAAAAATTCAGACAGAGGTAAAAGAAATACACAAAGTGTTTTATTGTGATCTATGCAACAAGCAGTACAAAATGGCTGTGGAATTTGAAGCTCACTTGAGTTCATACGATCACAATCACAGAAAGCGCTTTAAAGACATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATAGGCAAAAACGTGAGCAGCAACGTCAAGAGAAAGAGATGGCTAAGTTTGCTCAAATGGCAGATGCTCGTAAGCAGCAGCAGGTGCAACAACAGGAAGAAGAATCAGGTTCTACATCTGCATCACTTAAAGTAAAAAGTGTTACTGATCTTGGTCAGGACCAACGGAAAGCTTTGAAATTTGGATTTTCATCTAAATCATCCAAAGGTGCCATGTCTAAGCATTCACTTGGTAGTGCTGCAAAGAAATCAAAAGTGGTAATGGCATCAGTTTTTGAAAGTGATAGTGATGAAGGGTAG 831 40.55 NSLFEDLSEDFRLPISHKPTENVDLDQVEQASLDKQLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIRRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIHKVFYCDLCNKQYKMAVEFEAHLSSYDHNHRKRFKDMKEMHGTSSRDDRQKREQQRQEKEMAKFAQMADARKQQQVQQQEEESGSTSASLKVKSVTDLGQDQRKALKFGFSSKSSKGAMSKHSLGSAAKKSKVVMASVFESDSDEG 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6966315 6968341 + Bma021012.1 Bma05g00253 82337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00253 276 MobiDBLite consensus disorder prediction 168 196 - -
Bma05g00253 276 SUPERFAMILY beta-beta-alpha zinc fingers 122 161 IPR036236 -
Bma05g00253 276 Pfam Zinc-finger double-stranded RNA-binding 134 161 IPR022755 -
Bma05g00253 276 ProSitePatterns Zinc finger C2H2 type domain signature. 136 158 IPR013087 -
Bma05g00253 276 MobiDBLite consensus disorder prediction 168 226 - -
Bma05g00253 276 SMART G-patch_5 37 82 IPR000467 GO:0003676
Bma05g00253 276 ProSiteProfiles G-patch domain profile. 39 84 IPR000467 GO:0003676
Bma05g00253 276 Pfam G-patch domain 40 80 IPR000467 GO:0003676
Bma05g00253 276 MobiDBLite consensus disorder prediction 200 226 - -
Bma05g00253 276 MobiDBLite consensus disorder prediction 239 263 - -
Bma05g00253 276 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 3 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01426 Bma-Chr4:49210370 Bma05g00253 Bma-Chr5:6966315 7.38E-07 dispersed
Bma05g00253 Bma-Chr5:6966315 Bma13g00303 Bma-Chr13:5412293 3.36E-09 dispersed
Bma05g00244 Bma-Chr5:6592527 Bma05g00253 Bma-Chr5:6966315 9.44E-167 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57308 PF01585 G-patch 1.20E-15 CL0449 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00253 - - vvi:100244141 415.616