Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00269 ATGGCTTACGGGGATGATTCCAAAAAGAGGAAGAGATATACAATGGTGGGTGTTTCAGGTTTGTTACTCGTCGCCATGGTTGTGGCCGTGACGGTCGGAGTTAACTCGAACGGCAGCAGTGATAACTCTACGACGAGCAGCGACACCACCGAATTGTCTGCTTCAATGAAATCCATTCAGTCCATTTGCCAACCCACGACCTATAAACAAGAATGTGTTGAGAGTCTCAAATCTTCAAACTCGAGTGATCCGAAGGAACTCATTCAGGTTGGCTTCAAAGCCGCCATGAAATACGTCAATGAGGCTGCGAAGAAATCGGTTACTTTGCAAGAGATCGAGAAAGACCCGAGGGCTGCAAAAGCTCTTGCCGGTTGTAAAGAACTCATGGACTTCGCCATTGGCGAGCTCAAGCATTCGTTCAACAAGTTGGGTGAATTCGACATCACAAAGATTGATGAAATGCTCATAGACTTGAGAATTTGGCTAAGTGCTACCATCACGTACCAAGAAACTTGCTTGGATGGGTTTCAAAACACAACAAGCAGCGCTGGGGAGAAGATGAAATCAGCTTTGAAGACTTCCATGAGGCTAACCAGCAATGGCCTTGCCATGGTCACAGAGATGTCCTCCCTTCTAACGGACTTACAAATTCCAGGGATCAGCCGTAGGCTTCTATCCGATGACCTTCCCGTCCTCGGCCATGACGATTTCCCGGTCTGGTTCAACCCCGGCCTCAGGAGACTCCTCCAAGCTCCGGCTTCAAGCATCAAGGCCGACATCGTCATTGCCAAGGATGGAAGTGGAGCATATAAGACCATAAATGAAGCACTAACTGACATCCCTAAGTACAGCAATACTACCTTTGTGATTTACATCAAGGAAGGTGTTTATGATGAAACTGTCCATTTCAACAAAACCTTGACCCATTTGCTCGTCATCGGTGACGGCCCGACCAAAACCCGCATCACCGGAAGCAAAAACTTCATCGACGGCACCCCAACCTTTAAGACTGCAACAGTCGCCGTTCTTGGGGATTACTTCACTGCAAAGGACATTGGATTTGAAAATACTGCAGGGGCTGAGAAAACACCAGGCGGTCGCGTTGAGAGTCCAATCCGACTTCTCAGTCTTCTACAACTGCGCAATGGATGGTTACCAAGACACTCTATATGCTCACGCAAAGCGACAGTTCTATCGCGATTGCGAGGTCTCTGGTACTATTGA 1224 47.96 MAYGDDSKKRKRYTMVGVSGLLLVAMVVAVTVGVNSNGSSDNSTTSSDTTELSASMKSIQSICQPTTYKQECVESLKSSNSSDPKELIQVGFKAAMKYVNEAAKKSVTLQEIEKDPRAAKALAGCKELMDFAIGELKHSFNKLGEFDITKIDEMLIDLRIWLSATITYQETCLDGFQNTTSSAGEKMKSALKTSMRLTSNGLAMVTEMSSLLTDLQIPGISRRLLSDDLPVLGHDDFPVWFNPGLRRLLQAPASSIKADIVIAKDGSGAYKTINEALTDIPKYSNTTFVIYIKEGVYDETVHFNKTLTHLLVIGDGPTKTRITGSKNFIDGTPTFKTATVAVLGDYFTAKDIGFENTAGAEKTPGGRVESPIRLLSLLQLRNGWLPRHSICSRKATVLSRLRGLWYY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7592195 7593503 - Bma021036.1 Bma05g00269 82353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00269 407 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Bma05g00269 407 Gene3D - 253 371 IPR012334 -
Bma05g00269 407 CDD PMEI-like_3 61 210 - -
Bma05g00269 407 Pfam Plant invertase/pectin methylesterase inhibitor 58 204 IPR006501 GO:0004857
Bma05g00269 407 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 207 IPR006501 GO:0004857
Bma05g00269 407 PANTHER PECTINESTERASE 14 362 - -
Bma05g00269 407 SUPERFAMILY Pectin lyase-like 256 363 IPR011050 -
Bma05g00269 407 Pfam Pectinesterase 259 363 IPR000070 GO:0030599|GO:0042545
Bma05g00269 407 SMART PMEI_2 54 204 IPR006501 GO:0004857
Bma05g00269 407 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 209 IPR035513 -
Bma05g00269 407 PANTHER PECTINESTERASE 14 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00269 Bma-Chr5:7592195 Bma13g00619 Bma-Chr13:14730685 1.36E-160 dispersed
Bma05g00269 Bma-Chr5:7592195 Bma13g01193 Bma-Chr13:45200804 2.57E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00269 K01051 - csv:101207393 446.817