Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00270 ATGACATTTCGGAACACAGCGGGGCCGGAAAACTTCCAAGCGGTGGCGCTGAGAGTAGACTCTGACCAATCAGCGTTCTTCCGATGCAGCATCGAAGGCCACCAAGACTCTCTCTACATCCACTCTCTCCGCCAATTTTACCGCGAGTGCTCCATCTCGGGCACCATCGACTACATCTTTGGCAACGGCGCTGCCGTTCTTCAAAACTGCAAAATCTTCACGGGAGTCCCTCTTACGCTTCAGAAGGTTACGATCACAGCTCAGGGTCGGAAAAACCCCCATCAGAGCACCGGCTTCACGATCCAAAACAGCTTCATCTACGCCTCCCAGCCGACGTACCTGGGTCGGCCGTGGAAGCAGTACTCGAGAACAGTCTTTCTCAACACCTACATGAATGAGTTGGTGCAACCCAGGGGGTGGCTCGAATGGTGGGGGGACTTTGCGCTGGGGACCCTCTGGTATGGGGAGTACAAGAACTATGGGGCCGGAGCAGAGCTGTCCGGGAGGGTGAAATGGCCGGGTTATCATGTGATTAGGGACCCTTCGCTAGCTTCTTTCTTCACGGTTGGGAGGTTCATTGACGGACGTTCGTGGCTGCCTGCAACCGGCATTAGGTTTCATGATGGTCTGAGTGCTTAA 639 54.93 MTFRNTAGPENFQAVALRVDSDQSAFFRCSIEGHQDSLYIHSLRQFYRECSISGTIDYIFGNGAAVLQNCKIFTGVPLTLQKVTITAQGRKNPHQSTGFTIQNSFIYASQPTYLGRPWKQYSRTVFLNTYMNELVQPRGWLEWWGDFALGTLWYGEYKNYGAGAELSGRVKWPGYHVIRDPSLASFFTVGRFIDGRSWLPATGIRFHDGLSA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7600164 7600802 - Bma021037.1 Bma05g00270 82354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00270 212 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Bma05g00270 212 SUPERFAMILY Pectin lyase-like 1 208 IPR011050 -
Bma05g00270 212 PANTHER PECTINESTERASE 1 209 - -
Bma05g00270 212 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 1 209 - -
Bma05g00270 212 Pfam Pectinesterase 1 195 IPR000070 GO:0030599|GO:0042545
Bma05g00270 212 Gene3D - 1 212 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00270 Bma13g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00270 Bma-Chr5:7600164 Bma02g01157 Bma-Chr2:53565311 2.10E-87 dispersed
Bma05g00270 Bma-Chr5:7600164 Bma10g00665 Bma-Chr10:9604969 5.37E-78 transposed
Bma05g00270 Bma-Chr5:7600164 Bma10g00705 Bma-Chr10:10678874 2.63E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00270 K01051 - tcc:18600505 388.267