Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00316 ATGACTCCAGTATTGAGCTATGTACTATCAGGAGTGCATACACTATCCACTTCTGATCATTCCTCCGTGGTGTCCATGAATTTATTTGTGGCGCTGCTTTGTGGTTGTATTGTGATTGGTCATCTTCTTGAAGAGAATCGGTGGATGAATGAATCAATTACGGCCCTTGTGATTGGTCTAAGTACTGGAGTTGTCATTTTGCTATTCAGTGGGGGGAAAAGTTCGCATTTGTTAGTCTTCAGTGAAGATCTTTTCTTTATATATCTTCTTCCACCTATTATATTCAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTCAAAAACTTTATTACAATTATGCTATTTGGTGCCGTTGGTACATTAATCTCTTGTTGTGTCATATCATTAGGTGTTATACAGTTCTTTAAGAAGTTGGATATCGGATCGCTGGAAATTGGAGATTATTTAGCAATTGGTGTAATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTGAATCAGGATGAGACGCCTTTACTCTACAGTCTCGTATTTGGAGAGGGTGTAGTAAATGATGCCACATCAGTGGTGCTATTCAACGCAATCCAGAGCTTTGACCTCACCCATATTGATTCCAGGATTGCGTTACAATTTATTGGCAGCTTCTTCTACTTATTTTTTACAAGCACTGTTCTTGGAGTGATTACTGGTTTGCTCAGTGCTTTCATCATCAAAAAGCTGTATTTTGGCAGGCATTCTACAGACCGCGAGGTTGCTTTAATGATACTAATGGCATACCTTTCTTATATGATGGCGGAATTGTTCTATTTGAGTGGCATTCTTACGGTGTTCTTTTGCGGAATTGTGATGTCGCATTACACCTGGCATAATGTCACTGAAAGTTCACGAATTACCACAAAGCATGCTTTTGCTACCTTGTCTTTTGTAGCTGAGATCTTCATTTTCCTTTACGTTGGCATGGACGCATTGGACATTGAAAAATGGAGATCTGTCAGTAACAGTCCTGGGACTTCTGTGGCTGTTAGTTCCATACTGTTAGGTCTGGTTTTGGTTGGAAGAGCTGCATTTGTTTTTCCCTTATCCTTTCTGTCCAACTTAGCAAAAAAATCACCAGTGGAGAAAATTAGCTTTAGGCAGCAAGTGATAATATGGTGGGCTGGCCTCATGAGAGGTGCTGTATCAATGGCTCTTGCTTATAATCAGTTTGCCAGATCCGGTCACACTCAATTGCGTGGGAACGCAATCATGATCACAAGCACCATTACAGTCGTTCTCTTCAGCACAGTGCTATTTGGGTTGATGACCAAGCCTCTCATAAGGTTCTTGTTGCCTCAACCGAAATGGTCGGCGAGTATGGTTTTGTCCAATCCATCTACTCCCAAATCGTTAATCATTCCGCTTCTTGGAGGCGGTCAAGATTCCGAAGTAGATATTGGGGGCCACGATATTATCCGGCCAAGCAGTATTCGAGATCTCTTGACCACCCCAACGCACACGGTTCATCGCTACTGGCGTAAATTTGACAATGCCTTCATGCGCCCAGTGTTTGGCGGACGGGGATTTGTTCCCTTCGTGCCCAGTTCACCAACCGAGAGGAATCCCAACCAATGGCAGTGA 1626 42.5 MTPVLSYVLSGVHTLSTSDHSSVVSMNLFVALLCGCIVIGHLLEENRWMNESITALVIGLSTGVVILLFSGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFKNFITIMLFGAVGTLISCCVISLGVIQFFKKLDIGSLEIGDYLAIGVIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIDSRIALQFIGSFFYLFFTSTVLGVITGLLSAFIIKKLYFGRHSTDREVALMILMAYLSYMMAELFYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVAEIFIFLYVGMDALDIEKWRSVSNSPGTSVAVSSILLGLVLVGRAAFVFPLSFLSNLAKKSPVEKISFRQQVIIWWAGLMRGAVSMALAYNQFARSGHTQLRGNAIMITSTITVVLFSTVLFGLMTKPLIRFLLPQPKWSASMVLSNPSTPKSLIIPLLGGGQDSEVDIGGHDIIRPSSIRDLLTTPTHTVHRYWRKFDNAFMRPVFGGRGFVPFVPSSPTERNPNQWQ 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9974003 9979686 - Bma021119.1 Bma05g00316 82400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00316 541 Gene3D - 145 197 - -
Bma05g00316 541 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma05g00316 541 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma05g00316 541 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma05g00316 541 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma05g00316 541 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 26 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma05g00316 541 Pfam Sodium/hydrogen exchanger family 28 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma05g00316 541 PANTHER SODIUM/HYDROGEN EXCHANGER 12 540 IPR018422 GO:0006812|GO:0015299|GO:0016021
Bma05g00316 541 PANTHER SODIUM/HYDROGEN EXCHANGER 2 12 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00316 Bma-Chr5:9974003 Bma14g00316 Bma-Chr14:3944965 0 dispersed
Bma01g00580 Bma-Chr1:5206617 Bma05g00316 Bma-Chr5:9974003 0 transposed
Bma05g01064 Bma-Chr5:49333712 Bma05g00316 Bma-Chr5:9974003 0 transposed
Bma09g00716 Bma-Chr9:45234376 Bma05g00316 Bma-Chr5:9974003 0 transposed
Bma14g01894 Bma-Chr14:40484786 Bma05g00316 Bma-Chr5:9974003 1.28E-11 transposed
Bma01g00565 Bma-Chr1:5067918 Bma05g00316 Bma-Chr5:9974003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00316 - - zju:107412105 900.968