Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00317 ATGGGGTGTATACATAGCCGAGAAATATCTTCTCAGAATGTCGTAAGCTCAGAGGTTAAGAGGGAAATAAGTTCTGCTAATCTATCAAATAGGAAGGTAGATGATGATTTAGAGCAGGTGGTACCAAAAGCCGGTTCTAATGATGTTGACGAACTTAATGGCTTGGCTGAGAAAGAGATAAAAGCAGGCGAGGATCGGTATGTGTCACGGGAAAGAAGAAAGTCTAGGCCAAAACAACGGTCGAATGTTAATCTGAAGCAGTCACCAGGGGAGCAGCTGGCTGCAGGATGGCCACCTTGGCTTACAGCAGTGTGCGGAGAGGCACTCAATGGTTTGGTCCCACGAAGGGCAGATTCTTTCGAAAAAATTGAAAAGATTGGACAGGGAACTTATAGTAATGTATATAAAGCTAAAGATACAATCACAGGTAAAATTGTTGCACTAAAGAAGGTTAGATTTGACAATTCGGAGCCAGAGAGTGTGAAATTTATGGCGAGAGAGATACATATTCTGCGGCAGTTAGATCATCCTAATGTTATAAAGTTCGAGGGAATAGTTACATCAAGGATGGGGTATAGTTTGTATCTGGTGTTTGAGTATATGGATCATGATTTAGCAGGCCTTGCTGCAAACCCAGACATTAAATTTACAGAACCCCAGGTCAAGTGTTTTATGCATCAGCTATTATCTGGACTGGAGCACTGTCATAATCATGGTGTGCTTCATCGTGACATCAAAGGGTCTAATCTTCTTATTGATAGTGGAGGAGTACTAAAGATTGCTGATTTTGGCTTGGCTTCTTTCTTTGATCCTAACCACAAACATCCCATGACTAGTCGTGTGGTTACATTATGGTACCGACCACCTGAGCTTCTACTTGGGGCTACTGATTATGGCGTGGGAATAGACCTATGGAGTGCTGGTTGCATTGTAGCTGAGTTATTAGCCAGGAGTCCCATTCTGCCTGGCCGTAATGAGGTAGAGCAACTACATAAGATATACAAGCTTTGTGGCTCCCCTTCTAATGATTACTGGAAAAGAGCGAAATTGCCAAATGCAGCCTTATTTATGCCCCCACAACCTTACAAAAGATGTATAAGAGAGACATTTAAAGATTTTCCGCCCTCATCTTTCCCTCTGATTGAGACTCTTCTCGCAATTGATCCAGCAGAAAGAAAAACAGCAACAATTGCATTAGAAAATGAGTTCTTCATTACGAAACCCTATGCTTGTGAGCCTTCTAGTTTACCAAAATTCCCTCCTAGTAAGGAGATTGATGCAAAACGACGGGATGATGAAGCTCGGAGATTAAGAGCAGCCAGCAAGGCTCAGGGTGATGGCGTGAAGCAAAAACGAACTCGTGGCCGTGCTCCAAGGGCTGCGCCGGCTCCTGAAGCTAATGCCGAGTTCCAACCAAATATAGATAGAAGACGTCTAATAACACGGGCAAACGCCAAGAGCAAGAGCGAGAAATTTCCTCCTCCACATCAAGACGCAGAAATCGGCTTTCCGTTTGGATATTTGCAGCACAACGATCCTGCCAATGCTAGAATAGGCATCCCATTTAGCACAACCTCATTTGGCAATTCGAAAGAATCTGACCAAGCCTGGTCCGGTCCATTGGTTAACACTTCCAGAGTTGGTGCTTCTAGACCGAATAAGCATGGCGGTGGCAATGCTTGGGAATACTCCAAAGGGAAGAGT 1704 44.01 MGCIHSREISSQNVVSSEVKREISSANLSNRKVDDDLEQVVPKAGSNDVDELNGLAEKEIKAGEDRYVSRERRKSRPKQRSNVNLKQSPGEQLAAGWPPWLTAVCGEALNGLVPRRADSFEKIEKIGQGTYSNVYKAKDTITGKIVALKKVRFDNSEPESVKFMAREIHILRQLDHPNVIKFEGIVTSRMGYSLYLVFEYMDHDLAGLAANPDIKFTEPQVKCFMHQLLSGLEHCHNHGVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCIVAELLARSPILPGRNEVEQLHKIYKLCGSPSNDYWKRAKLPNAALFMPPQPYKRCIRETFKDFPPSSFPLIETLLAIDPAERKTATIALENEFFITKPYACEPSSLPKFPPSKEIDAKRRDDEARRLRAASKAQGDGVKQKRTRGRAPRAAPAPEANAEFQPNIDRRRLITRANAKSKSEKFPPPHQDAEIGFPFGYLQHNDPANARIGIPFSTTSFGNSKESDQAWSGPLVNTSRVGASRPNKHGGGNAWEYSKGKS 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9997295 10002581 - Bma031180 Bma05g00317 82401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00317 568 CDD STKc_CDK9_like 120 404 - -
Bma05g00317 568 MobiDBLite consensus disorder prediction 64 91 - -
Bma05g00317 568 PANTHER CELL DIVISION PROTEIN KINASE 65 555 - -
Bma05g00317 568 MobiDBLite consensus disorder prediction 526 550 - -
Bma05g00317 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Bma05g00317 568 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00317 568 Gene3D Phosphorylase Kinase; domain 1 109 202 - -
Bma05g00317 568 MobiDBLite consensus disorder prediction 422 453 - -
Bma05g00317 568 PANTHER OS01G0367700 PROTEIN 65 555 - -
Bma05g00317 568 MobiDBLite consensus disorder prediction 526 568 - -
Bma05g00317 568 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Bma05g00317 568 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Bma05g00317 568 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00317 568 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Bma05g00317 568 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00317 568 MobiDBLite consensus disorder prediction 415 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00876 Bma-Chr2:46976270 Bma05g00317 Bma-Chr5:9997295 2.59E-155 dispersed
Bma05g00317 Bma-Chr5:9997295 Bma15g00068 Bma-Chr15:810870 0 dispersed
Bma06g00279 Bma-Chr6:3892970 Bma05g00317 Bma-Chr5:9997295 4.54E-103 dispersed
Bma06g01518 Bma-Chr6:51612227 Bma05g00317 Bma-Chr5:9997295 8.54E-109 dispersed
Bma05g00317 Bma-Chr5:9997295 Bma06g00165 Bma-Chr6:2106363 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66493 PF00069 Pkinase 3.10E-67 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00317 K08819 - pvy:116114591 790.801