Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00366 AGAGAAATGAGTGCTTCGAGGTTCATAAAGTGTGTCACAGTCGGTGACGGTGCTGTCGGAAAAACTTGCATGCTCATCTCTTACACAAGCAATACTTTCCCGACGGACTACGTGCCTACGGTGTTCGATAATTTTAGTGCAAACGTGGTCGTGGATGGCAGCACAGTTAACTTAGGACTATGGGATACTGCTGGACAGGAAGATTACAATAGATTAAGACCTTTGAGCTACCGCGGAGCCGATGTCTTTTTGTTAGCATTCTCTCTTATTAGCAAAGCTAGCTATGAAAATATTGCTAAGAAGTGGATTCCTGAATTGAGGCACTACGCACCTGGCGTGCCGATCATTCTTGTTGGAACGAAACTTGATCTACGCGATGACAAGCAGTACTTCGCCGACCACCCGGGTGCAGTGCCCATTAGTACAGCCCAGGGGGAGGAACTGAGAAAGCTGATTGGCGCTCCAGTTTACATCGAGTGTAGTTCGAAAACTCAACAGAACGTGAAAGCGGTTTTTGATGCGTCAATCAAAGTGGTTCTCCAGCCTCCAAAGCAGCGGAAGAGGAGGAAGAGGAAGGCCGAGAGGTCGTGTGCCATATTGTGA 603 47.93 REMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQYFADHPGAVPISTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDASIKVVLQPPKQRKRRKRKAERSCAIL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11342009 11343983 + Bma021178.1 Bma05g00366 82450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00366 200 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Bma05g00366 200 ProSiteProfiles small GTPase Ras family profile. 4 200 IPR001806 GO:0003924|GO:0005525
Bma05g00366 200 Pfam Ras family 10 180 IPR001806 GO:0003924|GO:0005525
Bma05g00366 200 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Bma05g00366 200 PRINTS Transforming protein P21 ras signature 9 30 - -
Bma05g00366 200 PRINTS Transforming protein P21 ras signature 49 71 - -
Bma05g00366 200 PRINTS Transforming protein P21 ras signature 32 48 - -
Bma05g00366 200 PRINTS Transforming protein P21 ras signature 157 179 - -
Bma05g00366 200 PRINTS Transforming protein P21 ras signature 111 124 - -
Bma05g00366 200 Gene3D - 7 194 IPR027417 -
Bma05g00366 200 SMART ras_sub_4 6 182 - -
Bma05g00366 200 ProSiteProfiles small GTPase Rab1 family profile. 4 200 - -
Bma05g00366 200 CDD Rop_like 8 180 - -
Bma05g00366 200 TIGRFAM small_GTP: small GTP-binding protein domain 9 174 IPR005225 GO:0005525
Bma05g00366 200 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 3 200 - -
Bma05g00366 200 PANTHER RHO FAMILY GTPASE 3 200 IPR003578 GO:0005525|GO:0007264
Bma05g00366 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Bma05g00366 200 SMART rab_sub_5 9 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00366 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - pda:103724128 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01191 Bma-Chr2:54024392 Bma05g00366 Bma-Chr5:11342009 4.46E-93 dispersed
Bma05g00180 Bma-Chr5:5108450 Bma05g00366 Bma-Chr5:11342009 7.82E-124 dispersed
Bma05g00366 Bma-Chr5:11342009 Bma06g00090 Bma-Chr6:1380648 2.84E-116 dispersed
Bma05g00366 Bma-Chr5:11342009 Bma05g00172 Bma-Chr5:4867789 1.43E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00366 Bma_Chr05 FPKM 97.844429 99.262222 33.670631 35.548882 29.209503 29.381659 30.543289 26.744282 25.421076 27.9133