Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00373 ATGTCGAAGGAAGTTGCTGAAGAGGCGCAGACTCAACAGAACAAAGACTATGTCGATCCACCGCCTGCTGCGCTCTTCGACATGGCGGAGCTCCGTCAATGGTCCTTCTACAGGGCTCTCATCGCTGAGTTTATTGCTACGCTTCTCTTCCTCTACGTCGGTGTTGCCACTGTCATTGGAAACAACAAGCAACCCGCCGGTAGTTGCGATGGTGTTGGCCTTCTCGGCATAGCTTGGGCGTTCGGTGGCATGATATTCATCCTCGTTTACTGCACCGCCGGAATTTCTGGTGGTCATATCAACCCAGCTGTGACGGTGGGATTGTTCTTGGCTAGGAAGTTATCTCTAATCCGGTCTATAGCTTACATAATCGCTCAGTGCTTGGGAGCCATCGTCGGAGTTGGGTTAGTGAAGGCCTTCATGACTCAGCCTTACGTCGATAATGGCGGCGGAGCTAACTTAGTGCAACATGGCTACAGCAAAGGCACAGCAGTGGGTGCTGAAATCATCGGCACTTTTGTACTTGTCTACACTGTCTTCTCTGCGACTGACCCCAAAAGAAGCGCTCGCGACTCTCACGTCCCTGTTTTAGCTCCGTTGCCAATTGGATTTGCTGTGTTTATGGTTCACTTAGCTACCATCCCCATCAATGGCACTGGCATCAACCCAGCTAGAAGCTTAGGCGCTGCAGTGATCTACAACAATAAGAAAGTCTGGAACGAACATTGGATCTTCTGGGTTGGTCCTCTAGTTGGTGCTCTGGCTGCGACGATATACCATCAGTACATTCTCAGAGCAGCTGCCATTAAAGCTCTGGGGTCCTTCCGTAGCAACCCTACCAACTAA 846 50.83 MSKEVAEEAQTQQNKDYVDPPPAALFDMAELRQWSFYRALIAEFIATLLFLYVGVATVIGNNKQPAGSCDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTVGLFLARKLSLIRSIAYIIAQCLGAIVGVGLVKAFMTQPYVDNGGGANLVQHGYSKGTAVGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPINGTGINPARSLGAAVIYNNKKVWNEHWIFWVGPLVGALAATIYHQYILRAAAIKALGSFRSNPTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11918162 11919290 + Bma021192.1 Bma05g00373 82457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00373 281 CDD MIP 38 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PANTHER AQUAPORIN PIP2-1 1 281 - -
Bma05g00373 281 Pfam Major intrinsic protein 30 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Bma05g00373 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 281 IPR034294 -
Bma05g00373 281 SUPERFAMILY Aquaporin-like 29 265 IPR023271 -
Bma05g00373 281 Gene3D Glycerol uptake facilitator protein. 23 281 IPR023271 -
Bma05g00373 281 TIGRFAM MIP: MIP family channel proteins 42 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00373 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00373 Bma08g00749 CCT
Bma03g00613 Bma05g00373 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00373 Bma-Chr5:11918162 Bma08g01152 Bma-Chr8:50551770 3.98E-145 dispersed
Bma05g00373 Bma-Chr5:11918162 Bma03g00613 Bma-Chr3:5030967 1.50E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00373 K09872 - csin:114258065 480.33