Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00377 ATGGACTTTGATGAGTATGAATATCTTGAGAAAATGGTTGATAACCCTGAGCCCCCAAAAGTGAAGGACGCTGCTGGTGGGGGAGATGAAACTGTTAAGTATGGAGAGAAAAACCGCAATCGAAGTTCAAAGCATAAGATTGATGACAGAGACCGTGTTGAGCATCAATCCAAGTCTTCAAAATCTGAGGGTGAGTTGCGTAGTCATGATCGGAGTCGAGAAAGGAGCTCATTGAGACACCGTTCCCCTTCAAGAGACAAAGATAAAGATAGACACAAGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCAGAGCCAATCAGAGAAGCATCAAAGTGATCGGGATGAGAAGGATGGAGAGAAGAGTCAGGATAAAGAGGGTAAAGAAAGGGAAAAGGAAAGGGAACCAAAAGAGAGATTTCGAGAAAACAGCAGACGACAGAGAGAAAAAAAGGAAGACGCAACAGAACCTGAGGCAGACCCCGAACGAGATCAAAGGACAGTGTTTGCCTACCAGATCTGTTTGAAGGCAAATGAAAGAGATGTTTACGATTTCTTCTCAAGAGCTGGCAAGGTTCGAGATGTACGCCTCATAATGGATCGTAATTCAAGGCGTTCTAAGGGATTCGGGTATATAGAGTTCTATGATTCAATGTCAGTCCCTATGGCAATAGCACTTTCTGGTCAGATACTTCTTAGTCAACCTGTGATGGTGAAGCCATCAGAAGCTGAAAAGAACCAGGCTCACTCAGCATCGGCAATTGGTGGATCAGGTGGGGTTATAGGTCCTTATTCAGGTGGAGCCAGAAGGTTGTATGTCGGAAATCTGCATACTAGTATAACAGAAGATAACCTTCGTCAGTCGATTGTTTTCTCTTTCCATTTTCAGGTCTTTGGAGCATTTGGTTCCGTGGAGCTTGTGCAGTTGCCTGTTGATGAAACTGGGCATTGCAAAGGGTTCGGTTTTGTTCAGTTTGCGCGCCTGGAAGATGCTAGAAATGCATTGAGTTTGAATGGTCAGTTAGATATTGCTGGTCGGACGATAAAGGTGTCTGCTGTTACTGATCAAGTGGGATCACAGGATCTTGAAAAAAATACCGGTGATTTTGATGATGACGAAGGTGGAAACTTGTCATTAGATGCACGTTCTCGAGCACTTTTAATGCAGAAGTTGGATCGAAGTGGCACTGCTTCTAGCATTACTGGTTCAATCCCTGTTGGTAATAGCAATGCTCTCTCCCTTCCAATATCACCAACTGGCAGATCGGCACCAATGATTTCTTCTTTTGCTTCTCTTCCTGCTCTCACTGGACTTAGTGGTGCTGATTTTCAATTTCCTGCTACTACAATTCCTTCAATTGATACAATCGGTGTTCCAAGCAATTGTTTATTACTAAAGAATATGTTTGATCCATCAGTTGAGACAGAGCCAGATTTTGATATGGATATTAAAGATGACGTTCATGATGAATGTTCTAAGTTCGGAAACATAAAACACATCCACGTGGACAAGAATACTGCTGGTTTTGTCTACTTGAAATTTGAACACACACAATCGGCAATTGATGCACAACGAACTCTCCATGGAAGATGGTTTGCTGGGAAGATGATCACCGCAACTTTCATGGTAATGACCACTAAATCTCTAATATTTTTCACTTAA 1827 45.1 MDFDEYEYLEKMVDNPEPPKVKDAAGGGDETVKYGEKNRNRSSKHKIDDRDRVEHQSKSSKSEGELRSHDRSRERSSLRHRSPSRDKDKDRHKKREREREREREREREREREREREREREREREREREREREREREREREREREREREREREREREREQSQSEKHQSDRDEKDGEKSQDKEGKEREKEREPKERFRENSRRQREKKEDATEPEADPERDQRTVFAYQICLKANERDVYDFFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDSMSVPMAIALSGQILLSQPVMVKPSEAEKNQAHSASAIGGSGGVIGPYSGGARRLYVGNLHTSITEDNLRQSIVFSFHFQVFGAFGSVELVQLPVDETGHCKGFGFVQFARLEDARNALSLNGQLDIAGRTIKVSAVTDQVGSQDLEKNTGDFDDDEGGNLSLDARSRALLMQKLDRSGTASSITGSIPVGNSNALSLPISPTGRSAPMISSFASLPALTGLSGADFQFPATTIPSIDTIGVPSNCLLLKNMFDPSVETEPDFDMDIKDDVHDECSKFGNIKHIHVDKNTAGFVYLKFEHTQSAIDAQRTLHGRWFAGKMITATFMVMTTKSLIFFT 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11980763 11992559 - Bma021197.1 Bma05g00377 82461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00377 608 SUPERFAMILY RNA-binding domain, RBD 513 596 IPR035979 GO:0003676
Bma05g00377 608 SMART rrm2_1 517 595 IPR003954 GO:0003676
Bma05g00377 608 SMART rrm2_1 325 406 IPR003954 GO:0003676
Bma05g00377 608 CDD RRM3_RBM39_like 515 597 - -
Bma05g00377 608 CDD RRM1_RBM39_like 222 294 - -
Bma05g00377 608 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 602 - -
Bma05g00377 608 SUPERFAMILY RNA-binding domain, RBD 214 321 IPR035979 GO:0003676
Bma05g00377 608 MobiDBLite consensus disorder prediction 11 219 - -
Bma05g00377 608 PANTHER CC1-LIKE SPLICING FACTOR 1 602 - -
Bma05g00377 608 Gene3D - 511 604 IPR012677 -
Bma05g00377 608 SUPERFAMILY RNA-binding domain, RBD 322 412 IPR035979 GO:0003676
Bma05g00377 608 TIGRFAM SF-CC1: splicing factor, CC1-like family 102 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bma05g00377 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 289 IPR000504 GO:0003723
Bma05g00377 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 404 IPR000504 GO:0003723
Bma05g00377 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 540 592 IPR000504 GO:0003723
Bma05g00377 608 Gene3D - 214 308 IPR012677 -
Bma05g00377 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 599 IPR000504 GO:0003723
Bma05g00377 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Bma05g00377 608 SMART rrm1_1 517 595 IPR000504 GO:0003723
Bma05g00377 608 SMART rrm1_1 325 406 IPR000504 GO:0003723
Bma05g00377 608 SMART rrm1_1 222 294 IPR000504 GO:0003723
Bma05g00377 608 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 424 534 IPR029123 -
Bma05g00377 608 Gene3D - 317 416 IPR012677 -
Bma05g00377 608 Coils Coil 89 163 - -
Bma05g00377 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 410 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00377 K13091 RBM23_39; RNA-binding protein 23/39 - vvi:100253813 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01536 Bma-Chr1:33642758 Bma05g00377 Bma-Chr5:11980763 4.11E-10 dispersed
Bma05g00014 Bma-Chr5:1754958 Bma05g00377 Bma-Chr5:11980763 1.35E-07 dispersed
Bma05g00377 Bma-Chr5:11980763 Bma06g00534 Bma-Chr6:27430523 2.62E-168 dispersed
Bma13g00114 Bma-Chr13:1206051 Bma05g00377 Bma-Chr5:11980763 2.76E-11 dispersed
Bma14g00841 Bma-Chr14:9400266 Bma05g00377 Bma-Chr5:11980763 7.96E-09 dispersed
Bma05g00377 Bma-Chr5:11980763 Bma13g01053 Bma-Chr13:43224008 1.20E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65