Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00384 ATGGAGGTTCCGCTCATGTCTCTGGCTCCGAATGCATCGGCAACATCGATTACTGCAAGAGTTGCGTTGTGCTCGAAGCTTTGCGGTGATTTTCCCTCGAGAAGGAGAAGGCCAAGCTTAGATGGAGGTCGAGTTTTTCTGCCGTGCGTCCGAGCTTCGGCGGAGCAGCGTAGTGAGAGTTTGGAGGAGAGTGAGAGCCGCGGCGGATTCAGTAGCCCGGCAATGGAGGTGACAACGTTCGGGCGGAGCTTCAGCGAGTCGGAGTTTCCTGTTTGGGAGAAGATTGGAGCAGTGGTTAGGCTCAGCTATGGAATCGGAATTTACTGCGCAATGGGTCTTGGTGGAAGATTTATATGCTCTATTACTGGAATTGATTGCATGGGAGGGTTTCATCCTTCGTTGGATGCCATTCTTGAAGGACTTGGCTATGCGGCTCCCCCAATTATGGCTCTTCTCTTTATACTTGATGATGAAGTAGTGAAGTTGTCACCGCATGCTCGTGCCATTAGAGACGTAGAAGACGAGGAGCTACGAAGCTTCTTTTACGGAATGTCGCCATGGCAGTTTATTCTTATTGTTGCTGCAAGTTCAGTCGGAGAGGAGCTCTTTTACCGGGCAGCCGTTCAGGGGGCATTATCTGATATATTTCTATGGAGTAGAGATTTGGTGACAGATGCTCGAGGAATGGCCTCTCTGACTGGGGTGCTTCCTCCATTTGTCCCGTTCGCCCAAGCTTTTGCAGCTGTTATTACGGCCGCCCTCACCGGTTCGCTCTACTACGTCGCTGCATCTCCGAAAGACCCGACTTATGTCGTTGCCCCTGTTCTACAATCTCCATCGGGTCGAGAAAATGTGAAGAAGCTTTTTGCAGCTTGGTACGAGAGGAGACAAATGAAGAAGATCTACTCTCCTCTCCTTGAAGCTCTTCTCGCTCTCTATCTTGGTTTTGAATGGATACAGACGAGTAATCTTCTATCGCCAATTATAACTCACGGGATATACTCGACGGTCATTTTGGGTCACGGACTCTGGAAGATTCACGACCACAGGAGGCGACTACGGCAGAGAATTCAGCACCTCAAAGAAGAAAAAAAAAAGGTCAAGTAA 1107 49.5 MEVPLMSLAPNASATSITARVALCSKLCGDFPSRRRRPSLDGGRVFLPCVRASAEQRSESLEESESRGGFSSPAMEVTTFGRSFSESEFPVWEKIGAVVRLSYGIGIYCAMGLGGRFICSITGIDCMGGFHPSLDAILEGLGYAAPPIMALLFILDDEVVKLSPHARAIRDVEDEELRSFFYGMSPWQFILIVAASSVGEELFYRAAVQGALSDIFLWSRDLVTDARGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVAASPKDPTYVVAPVLQSPSGRENVKKLFAAWYERRQMKKIYSPLLEALLALYLGFEWIQTSNLLSPIITHGIYSTVILGHGLWKIHDHRRRLRQRIQHLKEEKKKVK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12139914 12142346 - Bma021209.1 Bma05g00384 82468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00384 368 PANTHER OS03G0100030 PROTEIN 1 366 - -
Bma05g00384 368 Pfam Type II CAAX prenyl endopeptidase Rce1-like 186 336 IPR003675 GO:0004222|GO:0016020|GO:0071586
Bma05g00384 368 Coils Coil 350 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00384 - - - csin:114269294 520.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00384 Bma-Chr5:12139914 Bma12g00202 Bma-Chr12:2694319 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g663 Blo02g00996 . . . . Bpe07g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01212 . . . . . . . . . Bma05g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009121 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00384 Bma_Chr05 FPKM 3.532222 3.730461 4.234939 4.139121 5.69758 6.014798 6.337464 9.382938 7.551658 8.458565