Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00385 ATGCCGGTGGCTGCTTCCGCCATTTACTTCCTTAATCTACGAGGCGATGTCCTCATCAACCGCCTCTATCGCGACGATGTCGGAGCTGACATTGTTTTGAAAGGACAAGATTATATTTCTCTTCACCTTGTGCTTTTTCGCTCTGCTGACTCATTTTTTTCCAGGGGAAATATGGTGGATGCTTTTCGAACACATATAATGCAAACAAAAGAACTTGGTACCTGTCCAGTACGTCAGATTGGCAGTTGCTCTTTCTTTTATATGAGAATCAACAATGTCTATATTGTGATCGTTGTCAGCAGCAATGCAAATGTAGCATGTGCGTTCAAATTTGTTGTTGAGGCTGTTGCACTGTTCAAATCCTATTTTGGTGGGGCTTTTGATGAGGATGCCATCCGTAATAATTTTGTTCTGATATATGAGCTTTTGGATGAAATCATGGATTTTGGTTATCCACAAAACCTTTCTCCTGAAATTTTAAAACTTTACATCACACAAGAAGGAGTTCGCTCACCATTCTCTTCCAAGGTTGCAGACAAGCCTGTCCCAAATGCAACCTTACAAGTTACTGGTGCAGTTGGTTGGCGGAGAGAAGGTCTTGTGTATAAAAAGAATGAGGTTTTTCTTGATATTATTGAAAGTGTCAATCTTCTTATGTCTTCAAAAGGTGGTGTTTTACGTTGTGATGTCACGGGGAAGGTCCTCATGAAATGCTTCCTTTCTGGTATGCCTGATTTGAAGTTGGGTTTGAATGATAAAATTGGTCTTGAGAAAGAGGCACAGCTGAAGTCTCGCCCGACTAAAAGTGGTAAAACTATCGAGCTTGATGATGTAACTTTCCATCAATGTGTAAACTTGACAAGGTTTAACTCAGAGAAGACAGTTAGTTTTGTGCCACCGGATGGTGAATTTGAATTGATGAAATATCGTATCACTGAGGGTGTTAATCTTCCTTTCCGAGTTTTGCCAACAATTAAAGAGCTTGGTCGAACAAGCATGGAAGTTAATGTCAAGGTAAAAAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGGGTTGTCATCAAAGTCCCTGTACCAAAACAAACAGCAAAAGCAAGTTTCCAAGTGACTTCAGGTCGAGCAAAGTACAATCCCGCTATAGACTGTCTTGTTTGGAAAATTCGTAAATTTCCAGGAGAAACCGAACCAAATATGAGTGCTGAAGTTGAGCTGATTTCCACCATGACGGAAAAGAAGTCTTGGACTAGACCCCCTATTCAGATGGAATTCCAGGTCCCCATGTTCACCGCTTCTGGTTTACGTGTTAGGTTCCTGAAGGTATGGGAGAAGAGTGGCTATAACACAGTGGAGTGGGTCCGATATATTACCAAAGCCGGATCATACGATATTAGGTGCTAA 1398 41.2 MPVAASAIYFLNLRGDVLINRLYRDDVGADIVLKGQDYISLHLVLFRSADSFFSRGNMVDAFRTHIMQTKELGTCPVRQIGSCSFFYMRINNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKVADKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIIESVNLLMSSKGGVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTSMEVNVKVKSVFGAKMFALGVVIKVPVPKQTAKASFQVTSGRAKYNPAIDCLVWKIRKFPGETEPNMSAEVELISTMTEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYDIRC 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12144560 12152394 + Bma021210.2 Bma05g00385 82469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00385 465 SUPERFAMILY SNARE-like 6 169 IPR011012 -
Bma05g00385 465 Gene3D Mu homology domain, subdomain B 201 460 - -
Bma05g00385 465 PIRSF AP_complex_mu 4 465 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 Gene3D - 40 172 - -
Bma05g00385 465 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 193 464 IPR036168 -
Bma05g00385 465 ProSiteProfiles Mu homology domain (MHD) profile. 204 464 IPR028565 -
Bma05g00385 465 Gene3D Mu homology domain, subdomain B 317 464 - -
Bma05g00385 465 PANTHER AP-2 COMPLEX SUBUNIT MU 54 465 - -
Bma05g00385 465 Pfam Adaptor complexes medium subunit family 194 465 IPR028565 -
Bma05g00385 465 CDD AP2_Mu_N 6 171 IPR043532 -
Bma05g00385 465 CDD AP-2_Mu2_Cterm 202 464 IPR043512 -
Bma05g00385 465 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 PRINTS Clathrin coat assembly protein signature 275 302 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 PRINTS Clathrin coat assembly protein signature 384 395 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 PRINTS Clathrin coat assembly protein signature 344 359 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 193 213 IPR018240 GO:0006886|GO:0016192|GO:0030131
Bma05g00385 465 PANTHER AP COMPLEX SUBUNIT MU 54 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00385 K11826 AP2M1; AP-2 complex subunit mu-1 - pvy:116110752 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00385 Bma-Chr5:12144560 Bma12g00201 Bma-Chr12:2672687 0 dispersed
Bma05g00385 Bma-Chr5:12144560 Bma04g00219 Bma-Chr4:1877523 1.70E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00385 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0