Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00389 ATGGGTAATCTGTATCGGGCTGTATATAATGAGCTTCAGGGTTTGTTTTGGGAGGTTGAAGAGGCAGAGGAGCCTTCTGATGTTAATCATACTCATGCAGCAACAGAACATGCATTGGATGATGCTGGGCAAGTAGTTGACAAAGGTGGTGATGTTTCGTCAGGGTTTAATGGTTCGCACCTTCCCACTGCTGGATCGGCCAAAAGAGTTACATTTCAATCAGAGGGAGGATCTGAAACTAGGATTAGAAGGCGGCTTTGGGAAGATCCCGAATACGGGCTTGATCTTTCAGGATCAGATAGATTTGCATTTTCAGTCGATGATGCACTTAGTGTAAGCAATGCGGGTTCAGCAGCTGGAAGGCGGTGGCTTCTGTTGTCTAAATTGAAACATGGGTGGTCTAAGCACAAGGAAGGTCATGGTAGAAAGTTGTTTTCATGGAGTTTTAGGTTGGAGGATAAAGAGAAGGTTGAGGTCGAGAATAAGGTAGAGGAGAGGCCATTGCGTTCTGGTAAGAAGAGGAAGGAGGGTCCAGTGGATCATGAGTTGGTTTTGGGAGCATTATCACGGGCTTTGGAAGTAACTGAGTTAGCTTATTTGGATATGACAGACAAGGTGCTTGATACAAACCCTGAGCTTGCATTGATGGGATCCTGCCTGTTGGTTGTGTTAATGAGAGATGAGAATGTGTATGTCATGAATGTTGGCGATAGTCGGGCAATTGTTGCCCAGTTTGAACCGCAAGAAGTTGGTCATTGTGCGGAGTCGGTGGAACAGGGTGAAGAAAGATCTCAGATGGAAGGTATAATGGAGGAATCATCAGCTCCGAGTGGAAGGGACAATGCCAAAGCGATAACATCCAGAAATGAATTTTCTAGACAAGAAATAAGTTTGATTGCATTGCAATTATCAACTGATCATAGCACAAGCGTTGAAGACGAAGTCACAAGGATAAAGAATGAACATCCGGATGACAAACACTGTATCGTTAATGATAGAGTGAAAGGTCGTCTCAAGGTTACAAGGGCATTTGGCGCAGGATTTCTTAAACAGAAAGATCTAATAAAATTAGCCAATGCACCCATTAATGCTTTATTTCTAATTATTTATCAAGAAAATATACTTCAAACTTTTTCTAAGATGCTAACTTACATATCATGCATGTTCATTTGGGAGCAGCCGAAGTTGAATGATTCATTGTTGGAAATGTTTCGCAATGAATATATAGGCACTGCACCATACCTATCCTGCTCACCTTCTCTTTGCCACCACAGACTTTGTCCGAAAGATCAGTTCTTAGTGCTCTCATCCGACGGTCTATACCAGTACCTAAGTAATCAGGAAGTAGTTTCTCATGTGCAAAATTTTATGGAGAAGTTTCCAGATGGCGACCCTGCTCAACACTTAATAGAGGAACTTCTTTTCCGTGCAGCCAAAAAAGCTGGTAACTTTCCATTTAGTTTTGTGAAATTTTATCTTAGCATGGATGGATTTGAATTATTGGACATCCCCCAGGGAGATCGTCGTAAATATCACGATGATGTGACTGTGATGGTTATTTCGCTCGAAGGAAGAATTTGGAAATCCTCAGGGAAGTACCTTTGA 1605 42.18 MGNLYRAVYNELQGLFWEVEEAEEPSDVNHTHAATEHALDDAGQVVDKGGDVSSGFNGSHLPTAGSAKRVTFQSEGGSETRIRRRLWEDPEYGLDLSGSDRFAFSVDDALSVSNAGSAAGRRWLLLSKLKHGWSKHKEGHGRKLFSWSFRLEDKEKVEVENKVEERPLRSGKKRKEGPVDHELVLGALSRALEVTELAYLDMTDKVLDTNPELALMGSCLLVVLMRDENVYVMNVGDSRAIVAQFEPQEVGHCAESVEQGEERSQMEGIMEESSAPSGRDNAKAITSRNEFSRQEISLIALQLSTDHSTSVEDEVTRIKNEHPDDKHCIVNDRVKGRLKVTRAFGAGFLKQKDLIKLANAPINALFLIIYQENILQTFSKMLTYISCMFIWEQPKLNDSLLEMFRNEYIGTAPYLSCSPSLCHHRLCPKDQFLVLSSDGLYQYLSNQEVVSHVQNFMEKFPDGDPAQHLIEELLFRAAKKAGNFPFSFVKFYLSMDGFELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12212581 12216266 - Bma021214.1 Bma05g00389 82473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00389 534 Pfam Protein phosphatase 2C 301 465 IPR001932 -
Bma05g00389 534 Pfam Protein phosphatase 2C 187 244 IPR001932 -
Bma05g00389 534 ProSiteProfiles PPM-type phosphatase domain profile. 25 522 IPR001932 -
Bma05g00389 534 PANTHER PROTEIN PHOSPHATASE 2C 393 532 IPR015655 GO:0004722|GO:0006470
Bma05g00389 534 PANTHER PROTEIN PHOSPHATASE 2C 29 393 532 - -
Bma05g00389 534 CDD PP2Cc 180 522 IPR001932 -
Bma05g00389 534 Gene3D - 122 529 IPR036457 -
Bma05g00389 534 PANTHER PROTEIN PHOSPHATASE 2C 29 1 355 - -
Bma05g00389 534 MobiDBLite consensus disorder prediction 56 76 - -
Bma05g00389 534 SUPERFAMILY PP2C-like 180 523 IPR036457 -
Bma05g00389 534 PANTHER PROTEIN PHOSPHATASE 2C 1 355 IPR015655 GO:0004722|GO:0006470
Bma05g00389 534 SMART PP2C_4 21 520 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00389 Bma-Chr5:12212581 Bma11g00119 Bma-Chr11:1139330 4.84E-108 dispersed
Bma05g00389 Bma-Chr5:12212581 Bma05g00390 Bma-Chr5:12241464 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00389 - - mcha:111014810 660.218