Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00390 ATGGGAAGTGGATTGTCGAGCCTCGTCTCGTGCCTGAAACCGGTGAACCGGACGGATGGACAGCCGGAGCATAATCCGACCCACCAGCAGGAAGTGGCCTTCGCCACCTCTGAGCCTCTGGATGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCGGCTCGCTTCCTCTCCCCGACTCCCTCCGATCGTTTTCTCTCCCCTTCTCATTCTCTCTGTTTCTCGCCTCCTCATGAACCCGCCGTCCAGAGGACTCGACCGCCGGTTCCGGAGACCGGGTTCAAGGCCATTTCCGGAGCTTCTGTCAGTGCCAATAGCGCTACTCCCAGATCTGTCCTCCTGCTTGACAATATTTACGATGATGCCACTGAGAGTACGTTTGGTACCGGCGGCGGTGTGAGAGGGAGTATCGTCAACGGTTTCGAGAGTACGTCGTCTTTTAGTGCTCTTCCTCTTCAGCCGGTTCCCAGAGGTGGAGCTGAGCCGTCGGGTCCAATGGAGCGGGGTGGATTCTTTCTGTCTGGTCCGATCGAGCGCGGCGCTCTCTCTGGTCCACTGGAAGCTAACACTGGCTCTGATGGAAGTGGGCGAGTTCCCTTCTCGGCTCCGCTCGGTGGGCTTTATGTAAAGAAAAGACGAAAGAAGGGAATTTCAGGTATTCGGAAGGCCTTCTACCGGAACTTCTCGGAGAAGAGGCCGTGGGTGGTGCCCGTGCTCAATTCTGCATTCAGGAAGGAAGACGGGGCTGCCAGGGACGAGTCGGAGCCAAAGAATGAGAGTGATGTTCAATGGGCACTTGGGAAGGCCGGGGAGGATAGAGTGCATGTGGTTGTATCCGAAGAGCAAGGATGGTTGTTTGTGGGTATTTATGATGGGTTTAATGGTCCTGATGGTCCCGAATTTTTGATGGGTAATCTGTATCGGGCTGTATATAATGAGCTTCAGGGTTTGTTTTGGGAGGTTGAAGAGGCAGAGGAGCCTTCTGATGTTAATCATACTCATGCAGCAACAGAACATGCATTGGATGATGCTGGGCAAGTAGTTGACAAAGGTGGTGATGTTTCGTCAGGGTTTAATGGTTCGCACCTTCCCACTGCTGGATCGGCCAAAAGAGTTACATTTCAATCAGAGGGAGGATCTGAAACTAGGATTAGAAGGCGGCTTTGGGAATTTTTGGCAGAGGATGATCCCGAATACGGGCTTGATCTTTCAGGATCAGATAGATTTGCATTTTCAGTCGATGATGCACTTAGTGTAAGCAATGCGGGTTCAGCAGCTGGAAGGCGGTGGCTTCTGTTGTCTAAATTGAAACATGGGTGGTCTAAGCACAAGGAAGGTCATGGTAGAAAGTTGTTTTCATGGAGTTTTAGATTGGAGGATAAAGAGAAGGTTGAGGTCGAGAATAAGGTAGAGGAGAGGCCATTGCGTTCTGGTAAGAAGAGGAAGGAGGGTCCAGTGGATCATGAGTTGGTTTTGGGAGCATTATCACGGGCTTTGGAAGTAACTGAGTTAGCTTATTTGGATATGACAGACAAGGTGCTTGATACAAACCCTGAGCTTGCATTGATGGGATCCTGCCTGTTGGTTGTGTTAATGAGAGATGAGAATGTGTATGTCATGAATGTTGGCGATAGTCGGGCAATTGTTGCCCAGTTTGAACCGCAAGAAGTTGGTCATTGTGCGGAGTCGGTGGAACAGGGTGAAGAAAGATCTCAGATGGAAGGTATAATGGAGGAATCATCAGCTCCGAGTGGAAGGGACAATGCCAAAGCGATAACATCCAGAAATGAATTTTCTAGACAAGAAATAAGTTTGATTGCATTGCAATTATCAACTGATCATAGCACAAGCGTTGAAGACGAAGTCACAAGGATAAAGAATGAACATCCGGATGACAAACACTGTATCGTTAATGATAGAGTGAAAGGTCGTCTCAAGGTTACAAGGGCATTTGGCGCAGGATTTCTTAAACAGCCGAAGTTGAATGATTCATTGTTGGAAATGTTTCGCAATGAATATATAGGCACTGCACCATACCTATCCTGCTCACCTTCTCTTTGCCACCACAGACTTTGTCCGAAAGATCAGTTCTTAGTGCTCTCATCCGACGGTCTATACCAGTACCTAAGTAATCAGGAAGTAGTTTCTCATGTGCAAAATTTTATGGAGAAGTTTCCAGATGGCGACCCTGCTCAACACTTAATAGAGGAACTTCTTTTCCGTGCAGCCAAAAAAGCTGGGATGGATTTTCATGAATTATTGGACATCCCCCAGGGAGATCGTCGTAAATATCACGATGATGTGACTGTGATGGTTATTTCGCTCGAAGGAAGAATTTGGAAATCCTCAGGGAAGTACCTTTGA 2367 48.46 MGSGLSSLVSCLKPVNRTDGQPEHNPTHQQEVAFATSEPLDETLGHSFCYVRSSARFLSPTPSDRFLSPSHSLCFSPPHEPAVQRTRPPVPETGFKAISGASVSANSATPRSVLLLDNIYDDATESTFGTGGGVRGSIVNGFESTSSFSALPLQPVPRGGAEPSGPMERGGFFLSGPIERGALSGPLEANTGSDGSGRVPFSAPLGGLYVKKRRKKGISGIRKAFYRNFSEKRPWVVPVLNSAFRKEDGAARDESEPKNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDGPEFLMGNLYRAVYNELQGLFWEVEEAEEPSDVNHTHAATEHALDDAGQVVDKGGDVSSGFNGSHLPTAGSAKRVTFQSEGGSETRIRRRLWEFLAEDDPEYGLDLSGSDRFAFSVDDALSVSNAGSAAGRRWLLLSKLKHGWSKHKEGHGRKLFSWSFRLEDKEKVEVENKVEERPLRSGKKRKEGPVDHELVLGALSRALEVTELAYLDMTDKVLDTNPELALMGSCLLVVLMRDENVYVMNVGDSRAIVAQFEPQEVGHCAESVEQGEERSQMEGIMEESSAPSGRDNAKAITSRNEFSRQEISLIALQLSTDHSTSVEDEVTRIKNEHPDDKHCIVNDRVKGRLKVTRAFGAGFLKQPKLNDSLLEMFRNEYIGTAPYLSCSPSLCHHRLCPKDQFLVLSSDGLYQYLSNQEVVSHVQNFMEKFPDGDPAQHLIEELLFRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12241464 12246065 - Bma021215.1 Bma05g00390 82474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00390 788 PANTHER PROTEIN PHOSPHATASE 2C 29 25 786 - -
Bma05g00390 788 SUPERFAMILY PP2C-like 268 777 IPR036457 -
Bma05g00390 788 CDD PP2Cc 488 776 IPR001932 -
Bma05g00390 788 Gene3D - 241 783 IPR036457 -
Bma05g00390 788 PANTHER PROTEIN PHOSPHATASE 2C 25 786 IPR015655 GO:0004722|GO:0006470
Bma05g00390 788 SMART PP2C_4 256 774 IPR001932 -
Bma05g00390 788 Pfam Protein phosphatase 2C 609 738 IPR001932 -
Bma05g00390 788 Pfam Protein phosphatase 2C 495 552 IPR001932 -
Bma05g00390 788 ProSiteProfiles PPM-type phosphatase domain profile. 257 776 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00665 Bma-Chr4:6405083 Bma05g00390 Bma-Chr5:12241464 3.08E-132 dispersed
Bma05g00390 Bma-Chr5:12241464 Bma11g00119 Bma-Chr11:1139330 0 dispersed
Bma05g00389 Bma-Chr5:12212581 Bma05g00390 Bma-Chr5:12241464 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00390 - - jre:108994087 1148.65