Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00397 ATGGCAGAATCGGTGGACCTACCGAGTCGTCTCGGTATCCTCCCTTTCAGAAACAAGGTCCTTCTTCCCGGCGCCATAATTAGAATTCGATGCACTTCACCGAGCAGTGTGAAGCTGGTGGAGCAGGAGTTATGGCAGCGAGAAGAGAAGGGATTAATTGGTATTCTTCCTGTTCGAGATGCTGCTGAGGCAACAACAATAGACCCTGTTCTATCTCAAGGAGTAGGAAGTGACTCTGGGGAACGGAGCTCAAGAGTTCAAGCTGGCACCGCAGATTCTGAAAGACTTGATGGGAAAAATCAGCAAGAAGCCATTCATTGGCATACAAGGGGAGTTGCTGCTCGTGCGTTACATCTATCTAGAGGAGTGGAGAAACCAAGCGGTAGAGTGACTTATACAGTGGTCCTTGAAGGTTTGTGCAGATTCAGTGTCCAGGAACTCAGCACCAGAGGAACATATTATGTTGCACGGATATCTCCTCTTGAAATGACAAAGGCAGAGATGGAACAGGTGGAGCAAGATCCTGACTTCACTTCATTGTCTCGCCTGTTCAAAGCCACTGCGATGGAGCTGATTTCTGTTCTTGAGCAGAAGAAAAAAACTGGAGGAAGAACAAAGGTTCTTTTGGAGACAGTTCCGGTTCATAAATTGGCTGACATTTTTGTTGCTAGCTTTGAAATAAGCTTTGAGGAACAGTTGTCCATGTTGGATTCCATAGATTTGAAATCAATACGCGTTGCTGAAAAGATAACTCAAAAGGTCGAGGGCCAGCTATCTAAATCGCAGAAAGAGTTTCTCTTGCGCCAGCAGATGAGAGCGATAAAAGAGGAGCTTGGTGACGATGATGATGAGGATGACTTGGCTGCTTTAGAAAGAAAGATGCAAAGCGCTGGGATGCCTACAAATATATGGAAGCATGCACAAAGGGAGTTAAGGAGCCTCAAAAAGATGCAGCCTCAGCAGCCTGGATATAACAGTTTACGTGTATACCTGGAGCTTCTTGCTGATCTGCCTTGGATAAAGGCTACTGAGGAACATGAGTTAGACTTGAAAGCTGCAAAAGAACGTCTTGACAATGATCATTATGGTTTAGTCAAGGTCAAGCAGAGGATCATAGAATATCTGGCTGTTCGCAAGCTTAAGCCTGATGCAAGAGGCCCAGTGTTGTGCTTTGTTGGCCCACCTGGTGTTGGGAAAACATCTTTGGCATCATCCATTGCTGCTGCATTGGGTAGAAAATTTGTACGCATATCCCTGGGAGGAGTGAAAGACGAAGCTGACATTAGGGGGCATAGAAGAACGTATATTGGAAGTATGCCAGGGCGTCTCATTGATGGATTGAAGGTAATTTTCCATATTCCCCACTTGTCCTTTTTTCTTTTTAGGGTATCTGTATACAATCCAGTTATGCTGCTAGATGAGATTGACAAGACTGGTTCTGATGTGCGTGGTGATCCTGCTTCAGCTCTACTGGAGGTCCTTGATCCTGAGCAGAACAAAAAATTTAATGACCAGTTTGATAGCTATTTGAACGTTCCATTTGACCTCTCAAAGGTTGTATTTGTGGCAACTGCGAATAGAATGCAGCCTATTCCTCCACCTCTCCTTGATAGGATGGAAGTCATTGAGCTTCCTGGATATACACAGGAGGAAAAACTTAAGATTGCCATGCGACATTTAATTCCACGAGTTCTGGATCAGCATGGATTGAATTCTGAGTTTCTTGAAATTCCGGAGACTATGGTGAAACTTGTCATTCAGCGGTACACTAGAGAGGCTGGTGTTCGGAACCTTGAGAGAAATTTGGCTGCTTTGGCTCGTGCAGCAGCAGTTAGAGTTGTGGAGCAAGAAGGTGCTTTTTCCATTAGTAAAGATGTGCACCATCTTGCTACACCGCTGCTGGAAAGCAGACTGGCAGATGGAGCAGAAGTAGAAATGGAGGTCCTTCCCATTGGAGCAAACAATCACGAGATATCAAACATAATTTCTCCATTGATAGTGGATGAGGCCATGCTGGAAAAAATTCTGGGGCCTCCAAGGTTTGACGATAGAGAAGCAGCAGAGAGAGTTGCAACTCCCGGGGTGTCTGTTGGGCTTGTTTGGACGTCTTTTGGGGGAGAGGTTCAGTTTGTAGAGGCGACAGCGATGGTCGGAAAGGGTGACTTACATCTCACTGGCCAACTTGGTGATGTCATCAAAGAATCTGCACAAATAGCTCTGACATGGGTAAGAGCCAGAGCAACCGATCTTAATTTGGTAGCTGCTGGAGTAACCAATATCTTGGAGGGCAGAGACATTCACATTCATTTTCCTGCTGGCGCAACACCAAAGGACGGCCCTTCAGCTGGTGTGACTTTGGTGACTGCTTTAGTCTCTTTGCTCAGTCATAAAAGAATGAGAGAAGACACTGCAATGACAGGAGAGATGACTCTGAGGGGCCTTGTGCTACCTGTTGGTGGTATAAAGGACAAGATATTGGCAGCACACCGCTACGGTATCAAGAGAGTCATTCTGCCAGAAAAAAACTTGAAAGACTTGGTTGAAGTTCCATCAGCTGTGCTTGCCAATTTAGAGGTAATTTTGTTTCTGGAGAAGGCAATTTCTAGGCTCGTGAGAACATTTCAGATTTTTCTTTCCATCAATTTATTTTGCTAA 2655 45.2 MAESVDLPSRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAEATTIDPVLSQGVGSDSGERSSRVQAGTADSERLDGKNQQEAIHWHTRGVAARALHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGTYYVARISPLEMTKAEMEQVEQDPDFTSLSRLFKATAMELISVLEQKKKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSIDLKSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLAALERKMQSAGMPTNIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWIKATEEHELDLKAAKERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKVIFHIPHLSFFLFRVSVYNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFNDQFDSYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTQEEKLKIAMRHLIPRVLDQHGLNSEFLEIPETMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVEQEGAFSISKDVHHLATPLLESRLADGAEVEMEVLPIGANNHEISNIISPLIVDEAMLEKILGPPRFDDREAAERVATPGVSVGLVWTSFGGEVQFVEATAMVGKGDLHLTGQLGDVIKESAQIALTWVRARATDLNLVAAGVTNILEGRDIHIHFPAGATPKDGPSAGVTLVTALVSLLSHKRMREDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPEKNLKDLVEVPSAVLANLEVILFLEKAISRLVRTFQIFLSINLFC 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12315759 12328524 - Bma021223.1 Bma05g00397 82481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00397 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 616 IPR027417 -
Bma05g00397 884 Gene3D - 173 282 - -
Bma05g00397 884 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 861 - -
Bma05g00397 884 Gene3D - 289 337 - -
Bma05g00397 884 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 393 412 - -
Bma05g00397 884 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 805 824 - -
Bma05g00397 884 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 828 846 - -
Bma05g00397 884 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 693 709 - -
Bma05g00397 884 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 775 794 - -
Bma05g00397 884 SUPERFAMILY Ribosomal protein S5 domain 2-like 693 861 IPR020568 -
Bma05g00397 884 ProSiteProfiles Lon proteolytic domain profile. 690 884 IPR008269 GO:0004176|GO:0004252|GO:0006508
Bma05g00397 884 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 242 IPR003111 -
Bma05g00397 884 PIRSF Lon_proteas 652 872 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bma05g00397 884 PIRSF Lon_proteas 1 636 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bma05g00397 884 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Bma05g00397 884 MobiDBLite consensus disorder prediction 70 90 - -
Bma05g00397 884 CDD AAA 370 547 - -
Bma05g00397 884 Gene3D - 350 544 IPR027417 -
Bma05g00397 884 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 778 786 IPR008268 GO:0004176|GO:0004252|GO:0006508
Bma05g00397 884 Gene3D - 692 873 IPR014721 -
Bma05g00397 884 TIGRFAM lon: endopeptidase La 13 861 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bma05g00397 884 Gene3D - 2 162 IPR046336 -
Bma05g00397 884 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 861 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Bma05g00397 884 SMART lon_5 10 253 IPR003111 -
Bma05g00397 884 MobiDBLite consensus disorder prediction 69 99 - -
Bma05g00397 884 SUPERFAMILY PUA domain-like 11 242 IPR015947 -
Bma05g00397 884 Pfam ATPase family associated with various cellular activities (AAA) 389 542 IPR003959 GO:0005524|GO:0016887
Bma05g00397 884 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 869 IPR027501 GO:0004252|GO:0006515
Bma05g00397 884 Pfam Lon protease (S16) C-terminal proteolytic domain 667 861 IPR008269 GO:0004176|GO:0004252|GO:0006508
Bma05g00397 884 SMART AAA_5 385 546 IPR003593 -
Bma05g00397 884 Gene3D - 545 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00397 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - mnt:21406119 1405.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00397 Bma-Chr5:12315759 Bma13g00604 Bma-Chr13:14252632 1.22E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00397 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0