Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00406 TCCATGGCTGCCATTTCCGCCAAACAATCCTCCGTATCGTCGCCTCACTTATTGAAGGACGCTCAGCCTTTGATCCCTGTGCAAGCTTCTCTTTCCTTCCCCTGCAAAACCCTCCCTAAGCCCTCTTCTTCGTCTTTCAAAGCTCCGTTCTCTCGCTTCACATACATCTCGCAAACCAATGAGAGCCGTCTCGTTGTTTCCGCCAAAAATCCTATCAGAGACCATGTCTCAGCGTACGACTCTGGCCCGGATGGAGGTTCCGTCTTTTATGACGATGATGATGATGAAAAGCCCCGCGAGGAGTGCGGCGTGGTTGGAATTTACGGTGACCCCGAAGCCTCTCGTTTGTGTTATTTGGCGCTTCACGCGCTCCAGCACCGTGGTCAGGAGGGCGCCGGTATTGTGTCTGTGAACGAAAACGTTCTTCAATCGGTAACCGGCGTTGGTCTAGTTTCCGACGTCTTCAACCAGACGAAGCTCGACCAATTGCGGGGTGATTCCGCTATAGGGCATGTCCGCTACTCCACTGCAGGGTCTTCCATGCTCAAGAACGTCCAGCCCTTCGTCGCAGGTTACAGATTTGGCTCCGTTGGGGTTGCCCACAATGGTAATTTGGTCAATTATGGTTCCCTTAGAGCGAAGCTTGAGGAAAACGGTTCCATCTTTAATACTAGCTCCGACACAGAAGTGGTTCTCCACCTCATTGCAATTTCTAAGCACAGGCCTTTTCTGTTGAGGATTGTGGATGCATGCGAGCAGCTTGAGGGGGCGTACTCGATGGTTTTCATTACAGAGGATAAGTTGGTGGCCGTGCGTGACCCGTTTGGTTTTAGGCCTTTAGTCATGGGTAGGAGAAGCAACGGAGCAGTTGTTTTTGCCTCTGAAACTTGTGCACTTGATTTGATAGAGGCCACATACGAAAGAGAAGTTTATCCTGGCGAGCTTGTGGTGGTTGATAAATCTGGCGTTCAATCCCTTTGTCTAATGGCTCATCCTCAACAAAAAGCCTGCATCTTTGAGCATATATACTTTGCTCTCCCTAACTCGGTTGTTTTCGGCCGATCAGTATATGAGTCTCGCCATGCTTTTGGGGAAATACTTGCAACGGAAGCCCCAGTTGACTGTGATGTCGTGATTGCAGTTCCAGATTCAGGGGTGGTAGCTGCGCTCGGCTATGCTGCTAAAGCAGGAGTGGCTTTTCAGCAGGGCTTGATTCGATCTCACTATGTTGGGAGAACTTTCATAGAGCCATCTCAGAAGATTAGGGACTTTGGAGTGAAGCTCAAGCTCTCACCAGTCAGGGCTGTTTTGGAAGGCAAGAGGGTCGTGGTTGTAGACGATTCAATTGTGAGAGGAACCACATCTTCTAAAATCGTGAGGTTGATCAAAGAAGCTGGAGCAAAGGAGGTCCATATGAGGATAGCAAGTCCTCCAATTATAGGCTCTTGCTATTACGGAGTAGACACACCAAGCTCAGAGGAGTTAATTTCTAATAGGATGAGTGTTGAGGAGATTAGGGAGTTTATTGGGTCTGATTCGCTTGCCTTTCTTTCATTCGATAGCTTGAAGAAGCATTTAGGCAGTGAGTCTCCCAACTATTGCTATGCCTGTTTTTCTGGTCATTATCCAGTTGAACCCAGAGAGATTAAAGTGAAACGGGTCGGCGATTTTGTAGATGACGGGTTAAATGGAAGCTTAGAATCCATTGATGGAGGCTGGGTCCAAGCAAATCGAAATCAGAAAGTAGAAGCTTAG 1755 48.43 SMAAISAKQSSVSSPHLLKDAQPLIPVQASLSFPCKTLPKPSSSSFKAPFSRFTYISQTNESRLVVSAKNPIRDHVSAYDSGPDGGSVFYDDDDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNENVLQSVTGVGLVSDVFNQTKLDQLRGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYGSLRAKLEENGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGELVVVDKSGVQSLCLMAHPQQKACIFEHIYFALPNSVVFGRSVYESRHAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLSFDSLKKHLGSESPNYCYACFSGHYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRNQKVEA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12793507 12795261 + Bma021239.1 Bma05g00406 82490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00406 584 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 102 543 IPR029055 -
Bma05g00406 584 CDD GPATase_N 102 352 IPR035584 -
Bma05g00406 584 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 102 321 IPR017932 -
Bma05g00406 584 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 75 574 - -
Bma05g00406 584 SUPERFAMILY PRTase-like 337 548 IPR029057 -
Bma05g00406 584 TIGRFAM purF: amidophosphoribosyltransferase 102 543 IPR005854 GO:0004044|GO:0009113
Bma05g00406 584 Gene3D - 361 525 IPR029057 -
Bma05g00406 584 CDD PRTases_typeI 364 475 IPR000836 -
Bma05g00406 584 Pfam Glutamine amidotransferase domain 182 299 IPR017932 -
Bma05g00406 584 Hamap Amidophosphoribosyltransferase [purF]. 101 542 IPR005854 GO:0004044|GO:0009113
Bma05g00406 584 Pfam Phosphoribosyl transferase domain 361 471 IPR000836 -
Bma05g00406 584 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 102 325 IPR029055 -
Bma05g00406 584 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 75 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00406 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - zju:107426528 912.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00406 Bma-Chr5:12793507 Bma15g01043 Bma-Chr15:42031272 1.33E-08 dispersed
Bma05g00406 Bma-Chr5:12793507 Bma05g00409 Bma-Chr5:12887275 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma05g00406 . 89 575 PRT Gene Family AT2G16570 84.9 4.7e-244 840.5
Bma05g00409 . 1 306 PRT Gene Family AT2G16570 83.5 5.6e-144 508.1
Bma05g00406 . 91 575 PRT Gene Family AT4G34740 85.6 1.0e-243 839.3
Bma05g00409 . 1 302 PRT Gene Family AT4G34740 82.0 5.0e-145 511.5
Bma05g00406 . 86 548 PRT Gene Family AT4G38880 74.2 1.7e-195 679.1
Bma05g00409 . 1 289 PRT Gene Family AT4G38880 75.9 1.5e-122 436.8
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 5 97 PRT Gene Family AT4G22570 84.9 1.8e-43 171.8
Bma05g00772 . 5 97 PRT Gene Family AT4G22570 82.8 7.4e-42 166.4
Bma12g00164 . 1 96 PRT Gene Family AT4G12440 83.3 9.8e-41 162.5
Bma05g00772 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma01g01441 . 3 188 PRT Gene Family AT1G71750 61.4 2.9e-63 238.4
Bma14g00666 . 16 470 PRT Gene Family AT1G55810 83.3 1.3e-220 762.3
Bma07g01237 . 16 459 PRT Gene Family AT1G55810 82.0 5.9e-213 736.9
Bma14g00666 . 67 475 PRT Gene Family AT3G27440 75.3 4.2e-181 630.9
Bma07g01237 . 67 459 PRT Gene Family AT3G27440 74.6 1.5e-173 605.9
Bma14g00666 . 3 469 PRT Gene Family AT3G27190 73.9 1.8e-204 708.8
Bma07g01237 . 3 459 PRT Gene Family AT3G27190 73.8 4.2e-201 697.6
Bma14g00666 . 1 470 PRT Gene Family AT4G26510 83.3 3.2e-230 794.3
Bma07g01237 . 1 459 PRT Gene Family AT4G26510 82.8 2.9e-223 771.2
Bma14g00666 . 3 472 PRT Gene Family AT5G40870 73.7 8.3e-205 709.9
Bma07g01237 . 3 459 PRT Gene Family AT5G40870 73.1 3.1e-199 691.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00406 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0