Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00408 ATGGATGTGAGCTTCTCTGCTAAGCCACGGACACTTTCTTTAACTTCCTGTCCTTCTTTCTCACCGTCCAAGCTCACCACCATCCGTAGACAGTTTCTAGGCTCTTCTCAAAGTCTCAGACCATCGATTGGTCTCCACTCTCGACGAAAATCCAGCGGTCTGCGTGATGCTCATCCTCCTCTAGTTCGAGCTTCCTTGGACTTTAATTCAATTCTCAATGCTGTTGCGGTAGTAACTTTCTCTGCGGTTTCTGTTGTTTACTGGAGCCATTGCAACAGAAAGGAGAATGAGAGAAAGGTTTCCCAAATGCCAAATCTTGCATCATCTCAACTTGGAAGAGCCATCAACTGGTTTGTTGAGAGTGATAGTCCAGGTCCTGGAGACCGTCGCGACGAGAACTTTTCTGAAAAATATTGTGTGTTGAGGAAAAGAATTGAAGAGAACATCTTTTCCAGGAAAGAAGAGGCGGTACTGCAGTTTCAGAATTCTGCTGCAATCCAAGAAGATGGTTGCTCAATTAAAACTTTACACATCCCTGGTTCTGATATTCATGATTCTAATGATAGTGAATCAATAATATCAATCAAACTTGAAACTATTGATCCGTCAGTCCCTCCAATGGGAATGGAATCTAGTGTCCTAAAGCCTCTTATTTTCGCTGAACGCATTACTAGCTTGAAATTGGAACAATCTCATGAAGAAATCAAATTATTTGCCGACTTGCCTTCCTTAACTGACGGAAGTAATTTTAGCCCTTCTTCGTTTGCTGTAAACAGTACTCTTGCTCAGGTTATGGAACAGTGCTACACAGAGAATGAACCAATCAGAAAGGGCCAATCAACTAGTGCTGACTCTCTTTTTGGAGTATCAACTAGAGAAGATATTTATACATTTTATGAGGCAAATGCAAATTCTGGTGGCCAAAGAACACATTCATATACTTCTTTAACCAATAATTCTGGATTTTCTAAATTGAGGGCTAATTCTGCTTTCCAAGAAGCAGACTTGACAGTGCATGTTTCTCTTCAGACAGATGGCCAGGATAAAAGAAATATAAATGTTGCAAGTTTTAAGGACAATCTTCCACGGGGAATAAAAAAGTCAGGAGAAGGTACTGGGTTTTCAAGCGGTAATGAAATAGCACAGCTGATGCAAAAAAGTAATGAGCTTTTGCATGAGTTGCCTCACCCAAATGGAGTACACATCAATGAGAAAAGGCAGCCGACAGAGCAGTTAAGAACCTACCATCGTTTGCTAAAAGAGGGGAGGTTAAGAGACTGTGTAGAATTACTTGAAGAAATGGATAGACTGGGATTTTTAGACATGAATAAGATATATCATGGAAGGTTTTTTGATAGTTGTAAAAGTAAAAGGGCAGTTGAAGAAGCCTTTCGTTTCAGCAACTTGATTCACAGCCGAACGCTGAGTACATATAACATGCTTATGTCTGTTTGTGCAAGTTCTCAGGATTCTGAGGGGGCTTTTCAAGTTATGCGACAAGTCCAGAAATCTGGAATGAAAGCTGATTGTAAACTTTACACTACTTTAATCTCAACATGTGCAAAATGTGGAAAAGTTGAGGCAATGTTTGAAGTATTCCATGGAATGGTTAATGCTGGAGTGGAACCTAATCTTCACACATACGGGGCACTTATTGATGGTTGTGCCAAAGCTGGTCAAGTGGCCAAGGCATTTGGCGTGTATGGAATGATGAGGTCGAAGAAAGTGAAGCCAGACCGTGTTATATTCAATGCTCTAATTTCTGCATGCGGTCAATCTGGAGCAGTGGATCGAGCCTTTGAAGTAGTGGAGGAAATGAGGGCTGAGGCACAACCTATTGACCCTGATCATGTAACTGTTGGTGCCTTGTTAAGAGCATGTGCACATTCTGGTCAGGTTGATCGAGCACGAGAAGCATATAAGATGATTCATAAATATAAAATCAAAGGCACACCCGAGGTTTACACTATAGCTCTTAGTTGTTGCAGTCAGACTGGTGAATGGGAATTTGCGCGCAGTGTATACAGCGACATGCTTAATAAAGGACTGCTACCCGATGAGATGTTTCTCAGCGCACTAATAGATGTTGCAGGGCATGCTGCGAAATTGGATGATGCCTTTGTGATCTTGCTAGAAGCTAAGAATTCAGGACTTGATGTTGGTATTATATCCTATAGCTCATTGATGGGAGCCTGTAGTAATGCAAAAAATTGGCAAAGAGGATTACAGCTATATGAGGATCTCAAGTCAATGAAGTTGAAACCCACAGTTCCAACCACTAATGCTTTAATAACTGCCCTGTGCGATGGGGACCAACTGCACAAGGCCGTAGAGGTTCTATCTGAAATGAATGGACTAGGACTGAGCCCAAACAGTATCACATACTCCTTACTTTTGGTCGCAAGCGAGAAAAAGAACGAAATAGAAATTGGGCTTCGCCTTTTTTCTCAAGCCGAAAAGGATGGGATTGCACTTAACCTAACCATGTCTAGATGTATAATTGGAATGTGCTTTCAAAGATTTGAGAAGGCATGTACACTCGGTGAAGCTGTCATATCTCAGGAGTCGGGACGACCTAAGCTTGACAATGAATGGACATCTACGGCCTTAATGAGATATAGAGCAATCATTACCGCTGGTGTAACACCTAGCTGTGAAGTTTTGTCCCAAGTTTTAGGTTGCCTGCAGCTCCCTCGTGATTTAACTTTGAAACAAAGACTCATTGACAACATTGGAGTAAGTGTGGATGTATCAAGATGCTCAAATCTCTCGTCCTTGATAGATGGATTTGGAGAATACGACCCTCGTGCTTGTTCACTGGTGGAGGAAGCTGCTTCGCTTGGCGTTTTACCTTGTATCTCTCTAAAAAAGAGTCCAATTGTCGTCGATACAAGAAAGTTGGAGACTCACTCCGCTAAGGTTTACATCTTGACAGTTTTGAAAGGTCTTAAACATCGCCTTGCTGCTGGTGCAAAGTTACCAACCATAACGATTTTAGTTCCGGTGGAGACGACAAAATTTGTATCAATCAAAGGGAAGAAAAACATCAATCTTGCAGGAAGGGTCGGTCAAGCAATTGCAGCAATGTTGAGACGACTCGAAATTCCTTTCCATGGAAATGAATCGAGTGGAAAAATCCGAGTCAATGGATTGTCCTTGAGAAGGTGGTTTCAGCCGAAACTCACCTCTCCATTCAACGGAAAACCAGGAGAGTTGGGTTCATCCTTCTCACGGCTTGGGGCAGGAATCAGTTTTCAGCAACGTGCCATCCGAACGGATAGTCTTTCGCTGGACTGA 3297 42.19 MDVSFSAKPRTLSLTSCPSFSPSKLTTIRRQFLGSSQSLRPSIGLHSRRKSSGLRDAHPPLVRASLDFNSILNAVAVVTFSAVSVVYWSHCNRKENERKVSQMPNLASSQLGRAINWFVESDSPGPGDRRDENFSEKYCVLRKRIEENIFSRKEEAVLQFQNSAAIQEDGCSIKTLHIPGSDIHDSNDSESIISIKLETIDPSVPPMGMESSVLKPLIFAERITSLKLEQSHEEIKLFADLPSLTDGSNFSPSSFAVNSTLAQVMEQCYTENEPIRKGQSTSADSLFGVSTREDIYTFYEANANSGGQRTHSYTSLTNNSGFSKLRANSAFQEADLTVHVSLQTDGQDKRNINVASFKDNLPRGIKKSGEGTGFSSGNEIAQLMQKSNELLHELPHPNGVHINEKRQPTEQLRTYHRLLKEGRLRDCVELLEEMDRLGFLDMNKIYHGRFFDSCKSKRAVEEAFRFSNLIHSRTLSTYNMLMSVCASSQDSEGAFQVMRQVQKSGMKADCKLYTTLISTCAKCGKVEAMFEVFHGMVNAGVEPNLHTYGALIDGCAKAGQVAKAFGVYGMMRSKKVKPDRVIFNALISACGQSGAVDRAFEVVEEMRAEAQPIDPDHVTVGALLRACAHSGQVDRAREAYKMIHKYKIKGTPEVYTIALSCCSQTGEWEFARSVYSDMLNKGLLPDEMFLSALIDVAGHAAKLDDAFVILLEAKNSGLDVGIISYSSLMGACSNAKNWQRGLQLYEDLKSMKLKPTVPTTNALITALCDGDQLHKAVEVLSEMNGLGLSPNSITYSLLLVASEKKNEIEIGLRLFSQAEKDGIALNLTMSRCIIGMCFQRFEKACTLGEAVISQESGRPKLDNEWTSTALMRYRAIITAGVTPSCEVLSQVLGCLQLPRDLTLKQRLIDNIGVSVDVSRCSNLSSLIDGFGEYDPRACSLVEEAASLGVLPCISLKKSPIVVDTRKLETHSAKVYILTVLKGLKHRLAAGAKLPTITILVPVETTKFVSIKGKKNINLAGRVGQAIAAMLRRLEIPFHGNESSGKIRVNGLSLRRWFQPKLTSPFNGKPGELGSSFSRLGAGISFQQRAIRTDSLSLD 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12866665 12877965 + Bma021242.1 Bma05g00408 82492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 651 685 IPR002885 -
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 756 790 IPR002885 -
Bma05g00408 1098 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 251 1098 - -
Bma05g00408 1098 Gene3D Tetratricopeptide repeat domain 728 854 IPR011990 GO:0005515
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Bma05g00408 1098 Pfam PPR repeat family 755 799 IPR002885 -
Bma05g00408 1098 Pfam PPR repeat 723 751 IPR002885 -
Bma05g00408 1098 Pfam PPR repeat 654 683 IPR002885 -
Bma05g00408 1098 Pfam PPR repeat 618 645 IPR002885 -
Bma05g00408 1098 Pfam PPR repeat 418 439 IPR002885 -
Bma05g00408 1098 Pfam Pentacotripeptide-repeat region of PRORP 477 609 IPR033443 -
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Bma05g00408 1098 Gene3D Tetratricopeptide repeat domain 449 610 IPR011990 GO:0005515
Bma05g00408 1098 Gene3D Tetratricopeptide repeat domain 611 721 IPR011990 GO:0005515
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 512 544 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 723 757 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 759 791 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 654 687 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 581 608 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 477 510 IPR002885 -
Bma05g00408 1098 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Bma05g00408 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 721 755 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00408 - - - qsu:112003578 1242.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00408 Bma-Chr5:12866665 Bma04g00096 Bma-Chr4:780018 5.17E-23 dispersed
Bma05g00408 Bma-Chr5:12866665 Bma15g00486 Bma-Chr15:5660373 3.39E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00408 Bma_Chr05 FPKM 9.147027 8.847713 8.229952 9.52898 7.923001 8.377502 7.728705 20.869511 23.510138 22.649458