Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00416 ATGGCTAATCCCCAGGTTTTCTTCGATATGACCGTCGGTGGACAGCCAGTTGGCCGGATCATCATGGAGCTCTACGCGGACGTTACTCCTCGTACTGCTGAAAACTTCAGAGCTCTTTGCACCGGCGAGAAAGGTGTTGGCAGGAGTGGCAAGCCCCTGCACTTCAAGGGCTCGACTTTCCACCGTGTGATCCCCCAATTCATGTGTCAGGGAGGAGATTTCACCAACGCAAACGGTACCGGTGGCGAGTCCATCTACGGGGCCAAGTTTGCCGACGAGAACTTTGTGAAGAAGCACACTGGTCCAGGTATTCTGTCTATGGCTAACTCTGGCCCTGGAACCAATGGATCTCAGTTCTTCATCTGCACCGTAAAGACCGAGTGGCTGGACGGTAAGCACGTGGTTTTCGGTCGCGTGGTGGATGGGATGGATGTAGTCAAATCGATCGAGAAAGTTGGATCCAGCTCAGGGCGGACCTCAAGACCGGTGGTGGTCGCCGACTGTGGCCAGCTCTCTTAG 519 54.91 MANPQVFFDMTVGGQPVGRIIMELYADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSTFHRVIPQFMCQGGDFTNANGTGGESIYGAKFADENFVKKHTGPGILSMANSGPGTNGSQFFICTVKTEWLDGKHVVFGRVVDGMDVVKSIEKVGSSSGRTSRPVVVADCGQLS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13200140 13200658 + Bma021256.1 Bma05g00416 82500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00416 172 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Bma05g00416 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 169 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 CDD cyclophilin_ABH_like 4 169 - -
Bma05g00416 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
Bma05g00416 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Bma05g00416 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Bma05g00416 172 Gene3D - 1 172 IPR029000 -
Bma05g00416 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 172 - -
Bma05g00416 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00416 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] - pvy:116118183 328.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00416 Bma12g00927 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00416 Bma-Chr3:3172320 Bma05g00416 Bma-Chr5:13200140 6.13E-68 dispersed
Bma03g00594 Bma-Chr3:4930425 Bma05g00416 Bma-Chr5:13200140 3.45E-115 dispersed
Bma05g00416 Bma-Chr5:13200140 Bma14g01231 Bma-Chr14:19689339 6.24E-96 dispersed
Bma05g00416 Bma-Chr5:13200140 Bma11g00080 Bma-Chr11:927526 1.25E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00416 Bma_Chr05 FPKM 42.290451 46.813049 38.244873 37.040627 64.549156 58.374359 69.311478 61.662361 64.703957 62.844936