Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00427 ATGAGTGATGTTCCTTCTCACTGGAGAGGGATCTGCCAAGTTGGAGAAGAATTCAATCGCTCCCATTGTAATAGGAAAATTATTGGTGCTCGTTGGTATAATAAAGGGTATGAAGCTGAATTTGGAAAATTAAATACAAGCGGGGTTGAGTTTCTCTCCGCTCGAGATGCTGACGGCCATGGCACACACACATCGTCTACTGCAGCTGGGGTTTCAGTGAAAAAGGCTAGCTTCCGAGGACTAGCTCAAGGAGTGGCAAGAGGTGGAGCTCCATCAGCTCATTTGGCTGTCTACAAAGTTTGTTGGGCAACTGGTGGCTGCAGCTCAGCTGACCTTCTTGCTGCATTTGACGATGCAATCTTTGATAGTGTTGATGTAATTTCTGCCTCCATCGGTTCAACGCCTCCACTTCCTTCTTATGTTGAAGATGTTATATCTATTGGCACTTTCCATGCCATAGCAAAAGGAATTTCTACCATATGCTCGGCCGGAAATTCCGGTCCGGAGCCTCAAACAGTTATTAACACAGCCCCGTGGATTATAACTGTAGCAGCAAGCACTATTGATCGAGCTTTTCCTGTCGGAATCAAACTGGGAAACAACAAAACTTTCATGGGTCAAGCTTTGTATACAGGGATGGATACCTCGAAATTTTACCCTATTGTCTTTGGAGAAGACATTGCCTCTAATGGTGTTGATGAAAACAAGGCTAGTGGTTGTAGTCATGGAAGCTTAAATGCAACATTAGCAAGAGGAAAATTGGTTCTTTGTTTTCAGTCTCGTTATCAGAGATCCGCCATAGTTGCGGCAACAACTGTGATGGACAGTGAAGGGGCTGGTATTATTTTCGCTCAGACTCCCACTAAGGATGTTGCCTTATCTTGGAGTTTCCTCTACATTCAAATAGACTTTTCAATCGGAACAGCTCTTCTCGCTTACATGGAAGCGACCAGAAACCCTGTAGTCAAGTTTAGTCTGACAAAAACAACCTTGGGGCGACAGATTTCACCTGAAATTGCTTACTTTTCGTCTCGAGGACCTAATTCCCTCTCTCCCTCTGTATTGAAGCCGGATGTTGCTGCTCCAGGTGTCAATATTTTAGCCTCGTGGTCTCCAGCTTCTTCCGACTTCCCATCAGTGACCCAAAATCAGCAGTATCGTGCTAGTTTCAAAATTGAATCAGGAACCTCCATGTCTTGCCCTCATATATCTGGTATAGTAGCCATGCTTAAAGCTCTCCATCCTTCATGGAGCCCTGCTGCCATCAAATCTGCACTAGTTACCACAGCTTCAATAAACGATGAATATGGTCAGAGAATTGTGGCAGAGGGAGCTCCCCATAAAAATGCAGACCCATTTGACTATGGAGGAGGGCATGTTGATCCCAACAAAGCCATGGACCCTGGTCTTGTATTCGACATGAAAAATGCAGATTATATACAATTCCTTTGCTCGATGGGATACAATGATAGTGCAGTGAGCTCGATGACTAAGACTCATACTCGATGCTCCAGATCCACCAAATATCTCCTAAATCTAAACCTACCATCCATTGCCATTCCAGAGGTAAAGACGAGTAGAACAGTGTTGAGAGAAGTCACCAATGTCGGCCTGAAAAACTCTATATACGTTGTTCGAGTTGAAGCTCCGGTCGGATTTTCCGTTTACATTGTGTATATGGGGGAAAGAAAATTTGCTGAGCCTGAGCTGGTTCAAGACTCTCACCATGAGATTCTTGCAGAGCTCCTTGGAAGTAAAGAAACTGCAAAAGAGTCGCTTCTCTACAGCTACAAGCATGGATTTTCTGGGTTTGCTGCGGTGTTAACCGAGCTTCAAGCCAAGTCTATTGCAGATTTCCCAGGAGTAGTTCGTGTGGTTCCTAATAGGATTCTGAGCCTGCACACTACTAGAAGTTGGGACTTTTTGCAAGTGAAGCCCTATTATGCTAATGGAATTCTCACAAAAAGTCAATCAGGAGCTGGTTCAATATTAGGAATAATGGACACTGGAATTTGGCCAGAATCTCCGAGCTTCAAAGATGATGGTATGAGTGATGTTCCTTCTCACTGGAGAGGGATCTGCCAAGTTGGAGAAGAATTCAATCGCTCCCATTGTAATAGGAAAATTATTGGTGCTCGTTGGTATAATAAAGGGTATGAAGCTGAATTTGGAAAATTAAATACAAGCGGGGTTGAGTTTCTCTCCGCTCGAGATGCTGACGGCCATGGCACACACACATCGTCTACTGCAGCTGGGGTTTCAGTGAAAAAGGCTAGCTTCCGAGGACTAGCTCAAGGAGTGGCAAGAGGTGGAGCTCCATCAGCTCATTTGGCTGTCTACAAAGTTTGTTGGGCAACTGGTGGCTGCAGCTCAGCTGACCTTCTTGCTGCATTTGACGATGCAATCTTTGATAGTGTTGATGTAATTTCTGCCTCCATCGGTTCAACGCCTCCACTTCCTTCTTATGTTGAAGATGTTATATCTATTGGCACTTTCCATGCCATAGCAAAAGGAATTTCTACCATATGCTCGGCCGGAAATTCCGGTCCGGAGCCTCAAACAGTTATTAACACAGCCCCGTGGATTATAACTGTAGCAGCAAGCACTATTGATCGAGCTTTTCCTGTCGGAATCAAACTGGGAAACAACAAAACTTTCATGGGTCAAGCTTTGTATACAGGGATGGATACCTCGAAATTTTACCCTATTGTCTTTGGAGAAGACATTGCCTCTGATGGTGTTGATGAAAACAAGGCTAGTGGTTGTAGTCATGGAAGCTTAAATGCAACATTAGCAAGAGGAAAATTGGTTCTTTGTTTTCAGTCTCGTTATCAGAGATCAGCCATAGTTGCGGCAACAACTGTGATGGACAGTGAAGGGGCTGGTATTATTTTCGCTCAGACTCCCACTAAGGATGTTGCCTTATCTTGGAGTTTCCTCTACATTCAAATAGACTTTTCAATCGGAACGTCTCTTCTCGCTTACATGGAAGCGACCAGAAACCCTGTAGTCAAGCTTAGTCTGACAAAAACAACCTTGGGGCGACAGATTTCACCTGAAATTGCTTACTTTTCGTCTCGAGGACCTAATTCCCTCTCTCCCTCTGTATTGAAGCCGGATGTTGCTGCTCCAGGTGTCAATATTTTAGCCTCGTGGTCTCCAGCTTCTTCCGACTTCCCATCAGTGACCCAAAATCAGCAAATTGTGGCAGAGGGAGCTCCCCATAAAAATGCAGACCCATTTGACTATGGAGGAGGGCATGTTGATCCCAACAAAGCCATGGACCCTGGTCTTGTATTCGACATGAAAAATGCAGATTATATACAATTCCTTTGCTCGATGGGATACAATGATAGTGCAGTGAGCTCGATGACTAAGACTCATACTCGATGCTCCAGATCCACCAAATATCTCCTAAATCTAAACCTACCATCCATTGCCATTCCAGAGGTAAAGACGAGTAGAACAGTGTTGAGAGAAGTCACCAATGTCGGCCTGAAAAACTCTATATACGTTGTTCGAGTTGAAGCTCCGGTCGGATTTTCCGTGAGAGTTGAACCATTAGTTTTATCGTTCAATTCTTCGATAGAGAAGCTCAAATTCAAGGTAACTTTCTGTCCACTCCTTAGAGTTCAAGGAAGATACTCCTTTGGCAATCTAATTTGGGAAGATGGTTTGCATGTTGTGAGGATACCCTTAGCAGTTAAACTGTGA 3714 44.26 MSDVPSHWRGICQVGEEFNRSHCNRKIIGARWYNKGYEAEFGKLNTSGVEFLSARDADGHGTHTSSTAAGVSVKKASFRGLAQGVARGGAPSAHLAVYKVCWATGGCSSADLLAAFDDAIFDSVDVISASIGSTPPLPSYVEDVISIGTFHAIAKGISTICSAGNSGPEPQTVINTAPWIITVAASTIDRAFPVGIKLGNNKTFMGQALYTGMDTSKFYPIVFGEDIASNGVDENKASGCSHGSLNATLARGKLVLCFQSRYQRSAIVAATTVMDSEGAGIIFAQTPTKDVALSWSFLYIQIDFSIGTALLAYMEATRNPVVKFSLTKTTLGRQISPEIAYFSSRGPNSLSPSVLKPDVAAPGVNILASWSPASSDFPSVTQNQQYRASFKIESGTSMSCPHISGIVAMLKALHPSWSPAAIKSALVTTASINDEYGQRIVAEGAPHKNADPFDYGGGHVDPNKAMDPGLVFDMKNADYIQFLCSMGYNDSAVSSMTKTHTRCSRSTKYLLNLNLPSIAIPEVKTSRTVLREVTNVGLKNSIYVVRVEAPVGFSVYIVYMGERKFAEPELVQDSHHEILAELLGSKETAKESLLYSYKHGFSGFAAVLTELQAKSIADFPGVVRVVPNRILSLHTTRSWDFLQVKPYYANGILTKSQSGAGSILGIMDTGIWPESPSFKDDGMSDVPSHWRGICQVGEEFNRSHCNRKIIGARWYNKGYEAEFGKLNTSGVEFLSARDADGHGTHTSSTAAGVSVKKASFRGLAQGVARGGAPSAHLAVYKVCWATGGCSSADLLAAFDDAIFDSVDVISASIGSTPPLPSYVEDVISIGTFHAIAKGISTICSAGNSGPEPQTVINTAPWIITVAASTIDRAFPVGIKLGNNKTFMGQALYTGMDTSKFYPIVFGEDIASDGVDENKASGCSHGSLNATLARGKLVLCFQSRYQRSAIVAATTVMDSEGAGIIFAQTPTKDVALSWSFLYIQIDFSIGTSLLAYMEATRNPVVKLSLTKTTLGRQISPEIAYFSSRGPNSLSPSVLKPDVAAPGVNILASWSPASSDFPSVTQNQQIVAEGAPHKNADPFDYGGGHVDPNKAMDPGLVFDMKNADYIQFLCSMGYNDSAVSSMTKTHTRCSRSTKYLLNLNLPSIAIPEVKTSRTVLREVTNVGLKNSIYVVRVEAPVGFSVRVEPLVLSFNSSIEKLKFKVTFCPLLRVQGRYSFGNLIWEDGLHVVRIPLAVKL 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13663105 13677818 - Bma021269.1 Bma05g00427 82511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00427 1237 Pfam Subtilase family 52 434 IPR000209 GO:0006508|GO:0008236
Bma05g00427 1237 Pfam Subtilase family 659 1064 IPR000209 GO:0006508|GO:0008236
Bma05g00427 1237 Pfam Peptidase inhibitor I9 555 634 IPR010259 -
Bma05g00427 1237 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 543 634 IPR037045 -
Bma05g00427 1237 CDD Peptidases_S8_3 4 431 IPR034197 -
Bma05g00427 1237 ProSiteProfiles Serine proteases, subtilase domain profile. 1 466 - -
Bma05g00427 1237 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 566 1060 IPR045051 -
Bma05g00427 1237 Gene3D - 1111 1237 - -
Bma05g00427 1237 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1071 1235 IPR045051 -
Bma05g00427 1237 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 552 IPR045051 -
Bma05g00427 1237 PRINTS Subtilisin serine protease family (S8) signature 394 410 IPR015500 -
Bma05g00427 1237 PRINTS Subtilisin serine protease family (S8) signature 56 69 IPR015500 -
Bma05g00427 1237 SUPERFAMILY Subtilisin-like 556 1150 IPR036852 GO:0004252|GO:0006508
Bma05g00427 1237 Gene3D - 189 331 - -
Bma05g00427 1237 Gene3D - 871 1013 - -
Bma05g00427 1237 CDD PA_subtilisin_like 878 1006 - -
Bma05g00427 1237 CDD PA_subtilisin_like 196 323 - -
Bma05g00427 1237 Gene3D Peptidase S8/S53 domain 1 479 IPR036852 GO:0004252|GO:0006508
Bma05g00427 1237 ProSitePatterns Serine proteases, subtilase family, serine active site. 395 405 IPR023828 -
Bma05g00427 1237 PANTHER OS09G0530800 PROTEIN 1 552 - -
Bma05g00427 1237 PANTHER OS09G0530800 PROTEIN 1071 1235 - -
Bma05g00427 1237 PANTHER OS09G0530800 PROTEIN 566 1060 - -
Bma05g00427 1237 SUPERFAMILY Subtilisin-like 22 470 IPR036852 GO:0004252|GO:0006508
Bma05g00427 1237 CDD Peptidases_S8_3 633 870 IPR034197 -
Bma05g00427 1237 Pfam Fibronectin type-III domain 512 557 IPR041469 -
Bma05g00427 1237 Pfam Fibronectin type-III domain 1140 1235 IPR041469 -
Bma05g00427 1237 Gene3D Peptidase S8/S53 domain 663 1064 IPR036852 GO:0004252|GO:0006508
Bma05g00427 1237 ProSiteProfiles Serine proteases, subtilase domain profile. 638 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00427 - - - qsu:112001023 977.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00187 Bma-Chr2:1729242 Bma05g00427 Bma-Chr5:13663105 4.83E-14 dispersed
Bma05g00427 Bma-Chr5:13663105 Bma06g01211 Bma-Chr6:49229903 2.21E-101 dispersed
Bma07g00315 Bma-Chr7:3797293 Bma05g00427 Bma-Chr5:13663105 9.14E-88 dispersed
Bma12g00418 Bma-Chr12:9393661 Bma05g00427 Bma-Chr5:13663105 4.87E-86 dispersed
Bma05g00427 Bma-Chr5:13663105 Bma05g00545 Bma-Chr5:29815588 3.60E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g27 . . . Bda08g00958 . . Bma05g00427 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1212 . . . . . . . . . . Bpe05g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001239 3 1 3 3 2 1 1 1 1 1 1 1 2 1 1 4 1 1 2 1 1 2 2 5 9 1 5 5 5 6 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00427 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.500521