Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00428 ATGGAGGCAATCAGAAAGCAAGCAACCAAGTTGCGGGAACAGGTCGCTAGGCAACAACAGGCTGTCTTCAAGCAGTTTGGAGGTGGCGGCTATGGGGGTTCCGATAATGTTATAACTGACGAGGCAGAACTCCAACAACATCAGAAACTCGAGAGGCTTTATATATCAACTCGTGCTGGCAAGCATTTTCAAAGGGATATTGTCCGTGGAGTTGAGGGTTACATTGTTACCGGTTCTAAACAAGTTGAAATTGCAGGGACAAAGTTGTCTGAGGATAGTAGGAAATATGGTTCTGAAAATACATGCACTAGTGGCAACACATTAACTAGAGCTGCATCAAGTTATGGACGTGCCCAAGCTCAAATGGAAAAGGAACGTGGGAATATGTTAAAAGCTCTTGGAACACAGGTGGCAGAGCCTCTACGAGCAATGGTAATGGGAGCTCCGCTGGAAGATGCAAGGCATCTTGCTCAACGCTATGATAGAATGCGACAAGAAGCTGAAGCTCATGCTATTGAAGTTTTCAAGCGGCAAGCAAAAGTCAGAGAAACGCCTGGAAACGCTGAGAATGCTATGAAACTTGAAGCCGCTGAAACAAAACTGCAAGAACTTAAGTCCAATATGGCCATTTTAGGAAAAGAAGCTTCCGCTGCTATGGTTGCTGTTGAAGCTCAACAACAGAGGTTAACTCTCCAAAGACTAATTGCAATGGTAGAAGCAGAACGTACATATCATCAAAAAGTTCTTCAGATACTTGATCAACTTGAGGGTGAGATGATATCAGAGCGGCAACGAATTGAAGCACCGCCTACTCCAATTGTTGATAATACAAGTACTATGCCTCCACCGTCATATGAAGAGGCTAATGGTGTGTATGCTTCTGAAGTAACTAATGGATTGACTGATGCCATGGGTTACTTCTTAGGGGAGGTTTGTGTGATTACTTTGAGATTTAAATTTCCATTATTTTCTGTCTTACTTTTGTTTATATTTTCAATTCCACTACAGGTTATGTATCAATATCAAGCCGAATCTGATGTGGAGCTAAGTTTGTCAATTGGTGACTACGTTGTTGTTCGAAAGGTTACTAACGGGGGCTGGGCCGAGGGTGAATGCAAAGGAAAAGCAGGTTGGTTCCCATTTGGATATATTGAAAGAAGGGATCGAGTTCTAGCTAGCAAGGTAGCTGAGGTGTTC 1197 43.11 MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVITDEAELQQHQKLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIAGTKLSEDSRKYGSENTCTSGNTLTRAASSYGRAQAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAHAIEVFKRQAKVRETPGNAENAMKLEAAETKLQELKSNMAILGKEASAAMVAVEAQQQRLTLQRLIAMVEAERTYHQKVLQILDQLEGEMISERQRIEAPPTPIVDNTSTMPPPSYEEANGVYASEVTNGLTDAMGYFLGEVCVITLRFKFPLFSVLLLFIFSIPLQVMYQYQAESDVELSLSIGDYVVVRKVTNGGWAEGECKGKAGWFPFGYIERRDRVLASKVAEVF 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13738918 13751627 + Bma031184 Bma05g00428 82512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00428 399 SMART SH3_2 333 388 IPR001452 GO:0005515
Bma05g00428 399 PRINTS Neutrophil cytosol factor 2 signature 355 371 - -
Bma05g00428 399 PRINTS Neutrophil cytosol factor 2 signature 371 384 - -
Bma05g00428 399 PRINTS Neutrophil cytosol factor 2 signature 335 355 - -
Bma05g00428 399 PANTHER PROTEIN, PUTATIVE-RELATED 336 399 - -
Bma05g00428 399 SUPERFAMILY BAR/IMD domain-like 47 259 IPR027267 -
Bma05g00428 399 Coils Coil 150 170 - -
Bma05g00428 399 Coils Coil 1 21 - -
Bma05g00428 399 ProSiteProfiles Src homology 3 (SH3) domain profile. 330 389 IPR001452 GO:0005515
Bma05g00428 399 Coils Coil 187 214 - -
Bma05g00428 399 Gene3D Arfaptin homology (AH) domain/BAR domain 46 270 IPR027267 -
Bma05g00428 399 PANTHER SH3 DOMAIN-CONTAINING 1 312 - -
Bma05g00428 399 Pfam Variant SH3 domain 337 385 IPR001452 GO:0005515
Bma05g00428 399 Gene3D SH3 Domains 328 397 - -
Bma05g00428 399 SUPERFAMILY SH3-domain 269 388 IPR036028 GO:0005515
Bma05g00428 399 Coils Coil 221 241 - -
Bma05g00428 399 PANTHER SH3 DOMAIN-CONTAINING 336 399 - -
Bma05g00428 399 PANTHER PROTEIN, PUTATIVE-RELATED 1 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00428 - - - gmx:100783004 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00428 Bma-Chr5:13738918 Bma07g01221 Bma-Chr7:47127657 2.77E-97 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00428 Bma_Chr05 FPKM 58.99826 61.568096 82.01683 81.032242 83.459198 86.666412 85.051888 106.675148 114.247612 108.751564