Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00433 CTTGATTTTAGAAGAATGAATGAGCGCGGCGAAGAGGGAGCCGCTACTAAGCACTCCGCCTCAACTGTGTTTGTTTCCAACTTACCTTACTCCTTTACCAACAAACTGCTTGAAGAAACATTTGAAGATGTCGGACCAGTTAGACGGGCTTTCATGGTTACAGAAAAGGGTATGTACAGAATCATGTTTGCTATCAAAGAAGATGCAAATCGTGCTATAGAGTTGATAAATGGGTCATCTGTTGAAGGCCGCAAAATTGCAGTCAAACATGCAATGCAGCGTGCTCCTCTTGAGCAGCGAAGATCGAAGGATCAACAAGTCATTCCCTTGAAGGCAAATAATGAAAAGGATGGTGAAACCTCCAAGTCAGGAAAGGATGCTTCAAATTTGGTAGAACAAGTTAAACTTGGGAAGAGTACCAAGGCATCTCCAGTTTCTCGTGATTTAGCTATTAAAGCAGGTTCTTCAGAGAAGCAAAGGGTTGCAAGGACTGTTGTATTTGGAAGTCTAATTAATGCTAAAATGGCTGAAGATGTTCATTGTCGAGCTCGAGACATAGGTCCTGTATGTTTAGTGACTTATCCATTGCCAAAAGAAGAAATTCGAACACATGGTTTGTTACGAGATGGATGCAAAATGGATGCTTCAGCCGTGCTTTATGATAGTGTAAAGTCTGCCCGTGCTGCTGTAGCAATGTTACATCAGAAAGAAATTGAAGGACATACCATATGGGCCCGCCAACTGGGGGGTGAGGGTTCCAAAACTCAGAAATGGAAAATTATTGTCAGAAACCTTCCTTTCAAGGTTTTTACCTACTCATTTAGTCTTTCAGTACTCTACTTTATTCTGACAAGCTTCGCTAAGCAATTTACGTTGACACAGGCCACAGAAAATGAAATAAAGAACACGTTTTCATCTGCTGGGTTTGTTTGGGACGTGTTCATTCCAAATAAATCTGACTCAGGATTGTCAAAGGGTTTTGCATTTGTGAAATTCACATGCAAACAAGATGTGGAGAATGCTATTAAACTGTTCAATGGTCAAACCTTTGGTAAAAGACCTATAGCTGTTGATTGGGCTGTTCCAAAGAAAATGTACAGTAATGGTGTCAATGCTACTCCGTTAGAAGATGGTAATTTGGAATTAAATGAAAGCAACAGAGATGGCGTCAGTAGTGATGAGGATTTGGAAGATGATCTGGAGGATTCTCAACAAAGCCCCCAGCATGCTGGAGTTAATCGTCTTTGTGACGATCCAATATCAACGGAGAAAGACATCACTGTTAAAGAACTTAATTTTGAAGAGGAAACAGACATGGCAAGAAAAGTTCTTATGAACTTCATCTCACGATCAGCTGAAGAAACTATTCCTTCTGCTAGTTATGACAAGGATCCAAATTCTGGTGAAGATAGTGGGGATTTACCTTCCAATTCATCTGTTGTGCCTGCCAAAGTAGCAGCAGCAACCAACCCAAAAAAAGTAAATGACAGTAAGATGTTAGATGTTAAAGAAGAGGTGGATGATGATTTACAGAGAACAACTTTCATAAGCAACCTTCCTTTTGAGGTCGAGAATGAAGAAGTGAAACTAAGATTTTCTGGATTTGGTGAAGTTCTGTCGTTTGTCCCAGTTGTTCATAAAGTCACCAAGCGACCCAGAGGTACAGGTTTTCTCAAGTTTAAAACCATAGATGCTGCTAATGCTGCTGTTGCAGCGGCAAAATCTGAGTCTGGTTTTGGAATTTTTCTGAAAGGGAGACAATTGACAGTATGGAAGGCTTTGAATAAGAAATCGGCACATGACAAGGAATTGGAGAAGTCCAAGAATGACAATAACGACCAGCGCAATCTTTACTTGGCCAAGGAAGGCCTAATTATTGCCGGAACCCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGATGAAACGTGAAAGGTTAGAGAAGAAAAAAGCGACTAAACTTGAATCTCCAAATTTTCATGTTTCAAGGACTAGACTTGTCGTATACAATTTACCTGTATCAATGAATGAAAAGAAACTAAAGGAGCTTTGTATTAAGGCAGTTCTTTCACGAGCTTCCAAGCAAAAGCCTGTGATTCGGCAGATAAAGTACGTCAAGGACACTAGGAAAGGAAATGCAGTGAAGAAAACCCAGAATCTTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATCAGCATGCACTTGTGGCCTTGAGAGTTCTCAACAACAATCCGGAAACATTTGGACCTGCAAATCGTCCAATTGTTGAGTTTGCTGTTGATAATGTGCAAATGTTGAAGCTACGAAAAGCCAAGCTACAAGTTCAGTTGCAGGGTCCCCGTAGAGATGCTCCGGATGCCCCTTTGCATGGAAAAGAGAAACCCAAGAAGTGGAAATCAGTAGACAATGATAGGTCAAGTAAAAATAAAATTTTGCATGAAGGTGAACAAGAACCAAGAATACCTAATGAAGCTGCTACAGAAGCAGGCATTAGCACAAACAAGCAGAAAGCCAAACCAGAGAGCGGAAAGCTGGCGGAGTCGTCTCTGAAAACCAAGTCAAGACAGAGAAAACAAAAGACAGAAAGTTGGAGGCAACGAAATGCTGGATCGGGTGAAGTGGCAGCTGCTGAGAACTATAAACCAGGATCTTTGGAGGGAAGAGATGTACAGCACAAAAAGAGGAAGCTGCATGAGGAAGTCAGACAAAGTAATGGAGAAGAAAGCTTGAAGACCCGAAAAAGACCAAAGAAGAACAAGGAACCCGTAGGGAGAGACGTTGCAGATAGACTGGACATGCTCATTGAACAATACAAATCCAAGTTCTCACAGCCGAGTTCCCGTGCAATCGGTGGCGATAGGAAAGATTCTGGACAAGTGAGAAAATGGTTCCAATCTTAA 2898 41.51 LDFRRMNERGEEGAATKHSASTVFVSNLPYSFTNKLLEETFEDVGPVRRAFMVTEKGMYRIMFAIKEDANRAIELINGSSVEGRKIAVKHAMQRAPLEQRRSKDQQVIPLKANNEKDGETSKSGKDASNLVEQVKLGKSTKASPVSRDLAIKAGSSEKQRVARTVVFGSLINAKMAEDVHCRARDIGPVCLVTYPLPKEEIRTHGLLRDGCKMDASAVLYDSVKSARAAVAMLHQKEIEGHTIWARQLGGEGSKTQKWKIIVRNLPFKVFTYSFSLSVLYFILTSFAKQFTLTQATENEIKNTFSSAGFVWDVFIPNKSDSGLSKGFAFVKFTCKQDVENAIKLFNGQTFGKRPIAVDWAVPKKMYSNGVNATPLEDGNLELNESNRDGVSSDEDLEDDLEDSQQSPQHAGVNRLCDDPISTEKDITVKELNFEEETDMARKVLMNFISRSAEETIPSASYDKDPNSGEDSGDLPSNSSVVPAKVAAATNPKKVNDSKMLDVKEEVDDDLQRTTFISNLPFEVENEEVKLRFSGFGEVLSFVPVVHKVTKRPRGTGFLKFKTIDAANAAVAAAKSESGFGIFLKGRQLTVWKALNKKSAHDKELEKSKNDNNDQRNLYLAKEGLIIAGTPAAEGVSASDMMKRERLEKKKATKLESPNFHVSRTRLVVYNLPVSMNEKKLKELCIKAVLSRASKQKPVIRQIKYVKDTRKGNAVKKTQNLGVAFVEFSEHQHALVALRVLNNNPETFGPANRPIVEFAVDNVQMLKLRKAKLQVQLQGPRRDAPDAPLHGKEKPKKWKSVDNDRSSKNKILHEGEQEPRIPNEAATEAGISTNKQKAKPESGKLAESSLKTKSRQRKQKTESWRQRNAGSGEVAAAENYKPGSLEGRDVQHKKRKLHEEVRQSNGEESLKTRKRPKKNKEPVGRDVADRLDMLIEQYKSKFSQPSSRAIGGDRKDSGQVRKWFQS 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14331507 14338699 + Bma021281.1 Bma05g00433 82517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00433 965 Gene3D - 501 603 IPR012677 -
Bma05g00433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 512 595 IPR000504 GO:0003723
Bma05g00433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 573 IPR000504 GO:0003723
Bma05g00433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Bma05g00433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 355 IPR000504 GO:0003723
Bma05g00433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 664 754 IPR000504 GO:0003723
Bma05g00433 965 MobiDBLite consensus disorder prediction 773 965 - -
Bma05g00433 965 MobiDBLite consensus disorder prediction 884 935 - -
Bma05g00433 965 SMART rrm1_1 513 591 IPR000504 GO:0003723
Bma05g00433 965 SMART rrm1_1 665 757 IPR000504 GO:0003723
Bma05g00433 965 SMART rrm1_1 259 358 IPR000504 GO:0003723
Bma05g00433 965 SMART rrm1_1 22 89 IPR000504 GO:0003723
Bma05g00433 965 MobiDBLite consensus disorder prediction 92 131 - -
Bma05g00433 965 MobiDBLite consensus disorder prediction 784 820 - -
Bma05g00433 965 SUPERFAMILY RNA-binding domain, RBD 512 742 IPR035979 GO:0003676
Bma05g00433 965 SUPERFAMILY RNA-binding domain, RBD 19 101 IPR035979 GO:0003676
Bma05g00433 965 CDD RRM4_RBM28_like 664 761 - -
Bma05g00433 965 Gene3D - 4 107 IPR012677 -
Bma05g00433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 93 IPR000504 GO:0003723
Bma05g00433 965 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 511 773 - -
Bma05g00433 965 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 15 402 - -
Bma05g00433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 362 IPR000504 GO:0003723
Bma05g00433 965 Gene3D - 663 758 IPR012677 -
Bma05g00433 965 MobiDBLite consensus disorder prediction 455 480 - -
Bma05g00433 965 SUPERFAMILY RNA-binding domain, RBD 295 366 IPR035979 GO:0003676
Bma05g00433 965 MobiDBLite consensus disorder prediction 839 863 - -
Bma05g00433 965 PANTHER RNA BINDING PROTEIN 511 773 - -
Bma05g00433 965 PANTHER RNA BINDING PROTEIN 15 402 - -
Bma05g00433 965 Gene3D - 248 391 IPR012677 -
Bma05g00433 965 MobiDBLite consensus disorder prediction 372 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00433 K14573 NOP4, RBM28; nucleolar protein 4 - pvy:116132361 965.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00433 Bma-Chr5:14331507 Bma14g00878 Bma-Chr14:9890046 6.32E-06 dispersed
Bma05g00433 Bma-Chr5:14331507 Bma05g00434 Bma-Chr5:14409347 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00433 Bma_Chr05 FPKM 9.857266 9.881609 4.857234 4.208501 0.702192 0.739122 0.689147 0.666098 0.559167 0.396264