Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00435 ATGGCTTCCCTTCATCAGTTGTCCGCTATTAAGGGCGCCAAAGTTCTCATGGTTGGAGCTGGTGGAATTGGCTGCGAGCTTCTCAAGACTCTGGCTCTCTCCGGCTTTGAAGACATTCATATTATTGATATGGATACCATAGAAGTCAGTAACCTTAACAGACAATTTTTATTCCGAAAATCTCACGTTGGGCAATCAAAGGCCAAAGTTGCTCGAGATGCAGTCTTAAGATTTAGACCTCTCATCAACATTACTGCATACCATGCAAATGTTAAGAATCAGGACTTCAATGTGGATTTCTTTAAGCAATTTAGTGTTGTCTTGAATGGACTTGACAACTTAGATGCAAGGCGACATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCTCTCGTTGAAAGTGGGACTACTGGATTCCTTGGACAGGTCACTGTTCATGTCAAGGGAAGGACAGAATGCTACGAATGTCAGCCAAAACCTGCCCCTAAAACATATCCTGTCTGTACAATTACTAGTACTCCTTCCAAGTTTGTGCACTGTATTGTTTGGGCGAAAGAACTTCTATTTGCAAAGTTGTATGGAGACAAAAATCAGGATAACGATTTGAATATACGGACTAGTGATACTGCTAGCTCATCAGATCATATGGAAGATGTGTTTGAACGTAGAGAAGATGAAGACATTGAGCAATATGGAAGAAGGATATATGATCATGTGTTTGGTTATAACATTGAAGTAGCTTTATCTAATGAAGAGACATGGAAAAATCGAAATAGACCAAGACCGATTTATACTAAAGATTTCCTTTCAGATGAGCTGACTCGACAGAATGGAAATATGAATGAAAAATGTGCAACCAGTGATTTATCATCGGTGTCTGCCATGACATCTTTGGGAATGAAAAATCCACAGGACATATGGAGTCTTGCTGAGAACTCCAGAATCTTTATCGAGGCATTTAAACTATTTTTCACAAAAAGGGAGAAGGATATTGGAAACGTGACTTTTGATAAAGATGATCAGCTAGCTGTGGAATTTGTCACTGCCGCTGCAAACATAAGGGCTGCTTCCTTTGGTATTCCGCTGCATAGCCTTTTTGAAGCCAAAGGTATTGCTGGTAATATTGTGCATGCAGTTGCAACAACAAACGCTATTATTGCTGGATTGATTGTTATTGAAGCAATCAAGGTGCTGCAAAATGATACAAATAATTACAGAATGACCTATTGCCTTGAACATCCATCGAGAAAGATGCTAATCATGCCAGTGGAACCATTTGAACCAAACAAATCCTGCTATGTTTGTTCTGAGACTCCTCTCACTCTTGAGATCAATACTCAACGGTCAAGGTTGAGGGATTTTGTTGAAAAGATTGTCAAGTCCAAGCTTGGGATGAACTTTCCACTTATCATGCATGGGGCTTCCCTTCTTTATGAAGTTGGTGATGATCTTGATGATGACATGGTGGCAAATTATGCCGCCAACCTTGAGAAGGTGTTATCTTCTCTGCCTTCTCCGGTTATCAGTGGGACAATTCTGACAGTCGAGGATCTCCAACAGGAGCTCATTTGTAGTATCAATATCAAACATAGAGAGGAATTTGACGAGGAAAAGGAGCCTGATGGAATGCTTCTATCCGGATGGGTTCAAGCACCTCTAATGGCCAACAACGAAGAGAAGTCCATTGGCAATGGCGAAAGCCTCTCGGAGCCCTTACCCGGAACAGTGAAGGAAGCCAAGATGAACAGGTCAGAAATTTTCAAAGGGCAGAAAAGAAAGTTATCAGAAGAATCCGAGTCTGTCAGCTCCAGAATTCACCGTAAAGAAACTAATAACTCTGACAAACTTGAACTTCTGGACGATGAAGAAGACCTTATCATGCTTGATGATGGGGCTACCTCCTCCCCATTTAAGAAGAAAAGGTTGCACTAG 1932 41.25 MASLHQLSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKAKVARDAVLRFRPLINITAYHANVKNQDFNVDFFKQFSVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLYGDKNQDNDLNIRTSDTASSSDHMEDVFERREDEDIEQYGRRIYDHVFGYNIEVALSNEETWKNRNRPRPIYTKDFLSDELTRQNGNMNEKCATSDLSSVSAMTSLGMKNPQDIWSLAENSRIFIEAFKLFFTKREKDIGNVTFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDTNNYRMTYCLEHPSRKMLIMPVEPFEPNKSCYVCSETPLTLEINTQRSRLRDFVEKIVKSKLGMNFPLIMHGASLLYEVGDDLDDDMVANYAANLEKVLSSLPSPVISGTILTVEDLQQELICSINIKHREEFDEEKEPDGMLLSGWVQAPLMANNEEKSIGNGESLSEPLPGTVKEAKMNRSEIFKGQKRKLSEESESVSSRIHRKETNNSDKLELLDDEEDLIMLDDGATSSPFKKKRLH 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14516402 14521151 + Bma021285.1 Bma05g00435 82519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00435 643 Pfam Ubiquitin-activating enzyme, SCCH domain 326 369 IPR019572 -
Bma05g00435 643 Gene3D - 436 629 - -
Bma05g00435 643 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 163 374 IPR023318 -
Bma05g00435 643 PIRSF SUMO_E1B 2 627 IPR030661 GO:0016925|GO:0019948
Bma05g00435 643 MobiDBLite consensus disorder prediction 588 614 - -
Bma05g00435 643 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 442 534 IPR028077 -
Bma05g00435 643 Gene3D - 2 108 IPR042449 -
Bma05g00435 643 Pfam ThiF family 6 433 IPR000594 -
Bma05g00435 643 CDD Uba2_SUMO 14 435 - -
Bma05g00435 643 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 487 IPR035985 GO:0008641
Bma05g00435 643 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 556 IPR045886 -
Bma05g00435 643 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 5 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00435 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - csv:101205378 1033.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00435 Bma12g00496 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01421 Bma-Chr1:23680993 Bma05g00435 Bma-Chr5:14516402 0 dispersed
Bma02g00690 Bma-Chr2:25352615 Bma05g00435 Bma-Chr5:14516402 2.20E-07 dispersed
Bma02g01280 Bma-Chr2:54849762 Bma05g00435 Bma-Chr5:14516402 5.16E-12 dispersed
Bma05g00435 Bma-Chr5:14516402 Bma12g00496 Bma-Chr12:14904169 0 dispersed
Bma05g00435 Bma-Chr5:14516402 Bma05g00443 Bma-Chr5:14801885 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00435 Bma_Chr05 FPKM 9.468905 10.866571 30.644411 32.379051 12.852888 13.247543 15.442333 20.271091 22.439571 21.429111