Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00439 ATGAATGATCTTATGACGAAATCATTTCTAAGCTACGTAGAATTGAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAACTCGATTCTGCAGATGAGCAAAATCTCTCCCTCTTTTTTGAAGAAGTTGCTGCTATCAAATCGAACATGGAAGAGATCACTAATCTTCTTTTAGACCTCCAAAACCTAAACGAAGAGGCGAAATCCATTTACAACGCCAAAGTTCTTAATGGAGTCCGAGACAAAATCAACTCAGACATGGTCGATGTTCTTCGAAAGGCAAAAAATATCAAATCAAAGCTTGGATTTCTCGACCAGTCCAATATCGCCAATCGAAAAGTGTCAAATTCGTACAGAGAAGGAAGCCCGGTTGATAGAACGAGGATGTCGGTTACGAACGGGCTGAGGATTAAACTGAGGGATATGATGAATGATTTTCAGGAGCTGAGAGAGCAGATCGTAAAGGATCATAAAGAGGGTTTGAAGAGGAGATATTTTGCTGCAACTGGAGAAGAAGCCAGCGAGAAAGCAATTGAAAGGATGATCTCAGAAGGTGGGCAAGAGAAAGTTTTTGAAGGGAAGAAAGATTTGTTAATGGAGAACGAGGAGAGAGAAGAGGCTCTGAAGGAGATACAGAGGAGCTTGAAAGAGCTGCATCAGGTTTTTCTTGACATGGCTATCATGGTGGAAACTCAAGGAGAGCAGATGAATGATATTGAACAGAATGTGGGTAGGGCTGGAGCTCATATCCATGGCGGAACAAAGGAGCTATTGGATGCCAAGAAGATGAAGAGTAGAGCTCAATGGACTTACTGGATTGCAGCTCTGGTTTTGATTCTGCTGTTGATTTGCCTTGTTTCCACTTTAGTTTTCTGA 894 42.17 MNDLMTKSFLSYVELKKQAMKDLEAGPDIEMGKLDSADEQNLSLFFEEVAAIKSNMEEITNLLLDLQNLNEEAKSIYNAKVLNGVRDKINSDMVDVLRKAKNIKSKLGFLDQSNIANRKVSNSYREGSPVDRTRMSVTNGLRIKLRDMMNDFQELREQIVKDHKEGLKRRYFAATGEEASEKAIERMISEGGQEKVFEGKKDLLMENEEREEALKEIQRSLKELHQVFLDMAIMVETQGEQMNDIEQNVGRAGAHIHGGTKELLDAKKMKSRAQWTYWIAALVLILLLICLVSTLVF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14599194 14600087 - Bma021290.1 Bma05g00439 82523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00439 297 Coils Coil 49 79 - -
Bma05g00439 297 PANTHER SYNTAXIN 4 293 IPR045242 -
Bma05g00439 297 Pfam Syntaxin 45 239 IPR006011 GO:0016020
Bma05g00439 297 SMART tSNARE_6 199 266 IPR000727 -
Bma05g00439 297 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Bma05g00439 297 CDD SNARE_syntaxin1-like 208 263 - -
Bma05g00439 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Bma05g00439 297 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma05g00439 297 Gene3D - 42 170 - -
Bma05g00439 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Bma05g00439 297 Pfam SNARE domain 240 290 IPR000727 -
Bma05g00439 297 PANTHER SYNTAXIN-112 4 293 - -
Bma05g00439 297 Gene3D - 197 296 - -
Bma05g00439 297 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00439 Bma-Chr5:14599194 Bma12g00507 Bma-Chr12:16198148 0 dispersed
Bma05g00439 Bma-Chr5:14599194 Bma05g00445 Bma-Chr5:14925210 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00439 K08486 - csin:114258522 412.535